Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., multidrug efflux RND transporter subunit MdtA from Escherichia coli ECRC62

 Score = 87.4 bits (215), Expect = 6e-22
 Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 25/308 (8%)

Query: 52  TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQA-------SAN 104
           T  A +   +  RV GQL  +    GQ+VK G++LA ++P ++ +   QA        A 
Sbjct: 81  TITAANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKAT 140

Query: 105 FQLADVQFQRAQRLRQDKVVSEQDFDQAQANHNSAKATWE-------QAKANLRYTQLIA 157
              A     R Q+L +  +VS Q+ D  QA  +  + T +        A+  L ++++ A
Sbjct: 141 LANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITA 200

Query: 158 PYDGTISLIPAEQYEYVAA--KQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFD 215
           P DG + L   +    +++    G++ I     + + F LP+  +    +       +  
Sbjct: 201 PVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVV 260

Query: 216 SFPNRQYPLQFQE-----IDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGS 270
              +R    +  E     +D + D+ T + KV       +D            L+    +
Sbjct: 261 EAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFNNQDDALFPNQFVNARMLVDTEQN 320

Query: 271 ATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVT--LNEQRQVL--TGLNDGDRIIISGVS 326
           A VIPT+AL     G +VW ++    VSK  VT  + + ++V+   G++ GDR++  G+ 
Sbjct: 321 AVVIPTAALQMGNEGHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGID 380

Query: 327 GVTEGIKV 334
            +TEG KV
Sbjct: 381 RLTEGAKV 388