Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit from Dickeya dadantii 3937

 Score = 90.9 bits (224), Expect = 5e-23
 Identities = 78/309 (25%), Positives = 139/309 (44%), Gaps = 29/309 (9%)

Query: 52  TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQ 111
           T  A +   +  RV GQL  +    GQ+VK+GE+LA ++P  + +   QA    QLA  Q
Sbjct: 83  TVTAANTVTVHSRVSGQLMALHFQEGQQVKEGELLAEIDPRPFVVALTQAQG--QLAKDQ 140

Query: 112 ---------FQRAQRLRQDKVVSEQDFD-------QAQANHNSAKATWEQAKANLRYTQL 155
                      R Q+L +  +VS Q  D       Q +A   S + +   A+  L Y+++
Sbjct: 141 ALLVNARQDLARYQQLSKTSLVSGQQLDTQQSLVRQYEATVKSDQGSVASAQLQLDYSRI 200

Query: 156 IAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFD 215
            AP+ G + L   +   YV +   ++ +     +   F +P+  +    +       V  
Sbjct: 201 TAPFSGRVGLRQIDIGNYVTSTDNLLVLTQTHPIDAVFTVPESDIATVLKAQKSGQPVLV 260

Query: 216 SFPNR--QYPL---QFQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPS-G 269
              +R  Q+ L   +   +D + D+ T + K+    +  +D  + P     + +   +  
Sbjct: 261 EAWDRANQHILSQGRLLSMDNQIDATTGTLKLKARFDNTDD-ALFPNQFVNIKMKVDTLQ 319

Query: 270 SATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVT----LNEQRQVLTGLNDGDRIIISGV 325
           +  V P++A+     G++VW ++D   VSK  VT      +Q  V TGLN G+R++  G+
Sbjct: 320 NVVVAPSAAIQMGNEGRFVWVLNDQDQVSKHIVTTGIQYGQQTVVSTGLNAGERVVTDGI 379

Query: 326 SGVTEGIKV 334
             +TEG +V
Sbjct: 380 DRLTEGARV 388