Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 89.4 bits (220), Expect = 1e-22
 Identities = 90/359 (25%), Positives = 150/359 (41%), Gaps = 33/359 (9%)

Query: 4   TLLAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGN--NTFSRQFPATTAAGDRAVL 61
           TLL F+    L   C  E  P  E   R   L  + V +      R++ A   A     L
Sbjct: 13  TLLVFACM--LYSSCSTESKP-REKKIREKSLPVMQVTSIDTALYREYVADIKAIQNVEL 69

Query: 62  AFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLA-------DVQFQR 114
             RVPG L+ I +  G+ VKKG++L + N +EY     +ASAN   A       + +  R
Sbjct: 70  RSRVPGFLEEILIDEGKYVKKGQLLFKTNDEEYKAALAKASANLTSAIAEAKALEYEVDR 129

Query: 115 AQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKA-------NLRYTQLIAPYDGTISLIP 167
            + +    V+SE +   A A HN+  A  E+AK+        L YT++ AP+ G I  IP
Sbjct: 130 LRIMVNKNVISESELKVALAKHNAVLAKIEEAKSAYAHADTQLGYTEIKAPFSGIIDRIP 189

Query: 168 AEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRF------SRDGVEAHMVFDSFPNRQ 221
                 +     +  +     + V F + +     +      S + +   ++ D  P   
Sbjct: 190 HRIGSLLDQGSLLTKVSDISAVHVYFNVSEREYLEYVNTQEDSNNDIVKLILADGTP--- 246

Query: 222 YPLQFQEIDTEADSKTRSYKVTMVMERPNDVGILP-GMAGRVSLMAPSGSATVIPTSALF 280
           YP + +    E +    +  +      PN   IL  G  G+V L        ++P  A+F
Sbjct: 247 YPYEGKIETMEGEFNANTGSIAFRARFPNQKQILKHGATGKVVLTNQVHDVLMVPQKAVF 306

Query: 281 AEQGGKYVWRVDDAGLVSKAA----VTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
             Q   YV+ +D+   V   +    V  +    V +G+ +GD+I+  G+  + EG+ ++
Sbjct: 307 EIQDRHYVFVLDENNQVKMKSFIPKVRFSHYYVVESGIEEGDKIVYEGIQDLQEGMTIQ 365