Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 87.4 bits (215), Expect = 5e-22
 Identities = 77/331 (23%), Positives = 147/331 (44%), Gaps = 29/331 (8%)

Query: 24  PVPEPDSRPAKLTTVSVG----------NNTFSRQFPATTAAGDRAVLAFRVPGQLQTID 73
           P   P S P  +T + V           NN           + +   L   + G +++I+
Sbjct: 35  PSKSPQSTPEAMTALPVDVVEVTPERLENNL---NVTGNVLSNESVSLRAEITGLVESIN 91

Query: 74  VLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQAQ 133
              GQ VKKG  L  LN DE      +     +L + Q  R ++L   + +S++++D   
Sbjct: 92  FEEGQFVKKGTPLVYLNDDELTAQLDRLEYTKKLYEGQESRQKQLLAREAISQEEYDIIL 151

Query: 134 ANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQF 193
             +N+  +  +  KA L  T + AP+DG + L        ++    + NI     +K++F
Sbjct: 152 NQYNTTLSDIKLVKAQLDKTVIKAPFDGVLGLRQISAGSVISTTDIIANIVNIDPIKIEF 211

Query: 194 LLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEI---DTEADSKTRSYKVTMVMERPN 250
            +P+   ++     V+     +   N  + L+  ++   +   D+ TR+  +T+    PN
Sbjct: 212 SIPERYASQ-----VQVGSTIEFSNNASHGLKKGKVYAYEPVIDANTRT--LTLRAISPN 264

Query: 251 -DVGILPGMAGRVSL-MAPSGSATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVTL---- 304
            D   LPGM   +   +     A ++P+ +L  E  G  ++ V+  G+V +  V +    
Sbjct: 265 EDRKFLPGMFVNIRFNLEVEEDALLVPSQSLIPELNGYKLFLVNQEGIVQERQVQIGIRT 324

Query: 305 NEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
           + + Q+L GL+ G+ ++ +GV    EG+KV+
Sbjct: 325 DSEVQILDGLSPGEMVLTTGVLQAKEGMKVK 355