Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 82.8 bits (203), Expect = 1e-20
 Identities = 63/279 (22%), Positives = 128/279 (45%), Gaps = 13/279 (4%)

Query: 67  GQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSE 126
           G L+ I V  GQ VKKG++L ++ P  Y    Q+A A    A++++Q  + L    VV+ 
Sbjct: 68  GYLEKIYVDEGQFVKKGQLLFKIMPKLYQAEFQRAKAEVSFAEIEYQNTKSLADRDVVAP 127

Query: 127 QDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTN 186
            +   A+A  + A A    A+ +L +T++ AP++G I          +   + + N+  N
Sbjct: 128 NELAMAKAKLDKANAELALAQTHLDFTEIRAPFNGIIDRFHVRVGSLIDEGELLTNLSDN 187

Query: 187 QLLKVQFLLPD----HLLNRFSRDGVEAHMVFDSFPNRQ---YPLQFQEIDTEADSKTRS 239
             + V + +P+      ++   +D   A MV     N +   +P + + I+ + + +T +
Sbjct: 188 SHMWVYYNVPEAEYLDYMSNLKKDS-SATMVNLLMANNKVFGHPGKVETIEADFNHETGN 246

Query: 240 YKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVDDAGLVSK 299
                    PN + +  G  G + +  P  +A +IP    F     +YV+ +D+   +  
Sbjct: 247 IPFRATFPNPNGL-LRHGETGNIQMSVPFKNAMIIPQKTTFEVLDKRYVYVLDEDHKLHA 305

Query: 300 AAVTLNEQRQ----VLTGLNDGDRIIISGVSGVTEGIKV 334
             +T+  +      +  GL + D++++ G+  V E  ++
Sbjct: 306 REITVAAEMPHLYVIQDGLEENDKVLLEGLRLVRENDEI 344