Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., efflux RND transporter periplasmic adaptor subunit from Bacteroides stercoris CC31F

 Score =  131 bits (329), Expect = 3e-35
 Identities = 100/352 (28%), Positives = 175/352 (49%), Gaps = 23/352 (6%)

Query: 3   KTLLAFSICSTLLV-GCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVL 61
           K +  F++  TL+V  CG++      P  RP K  TVS   +   + F     A +   L
Sbjct: 2   KKMYLFALTVTLIVTSCGQKKGE-DIPLVRPVKTATVS-SQSVILKDFSGMVEAVEYVKL 59

Query: 62  AFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQD 121
           AFRV GQ+  + V+ GQ V+KG+++A ++P + +L      A ++ A  Q +R +RL   
Sbjct: 60  AFRVSGQIIDLPVVEGQRVRKGQLIAAIDPRDISLQYAADKAAYETAAAQVERNKRLLGR 119

Query: 122 KVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVM 181
           + +S Q+++ + AN+  AK+ +E +  N+R T+L+AP+DG+I     E Y+ V + +G++
Sbjct: 120 QAISLQEYEISVANYQKAKSAYELSTNNMRDTKLLAPFDGSIEKRLVENYQRVNSGEGIV 179

Query: 182 NIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQE-IDTEADSKTRSY 240
            +   Q L+++F +PD  L           + FD++    +  + +E +D   D      
Sbjct: 180 RLVNTQKLRIKFTVPDDYLYLLRAKDATFKVEFDTYKGNIFNARLEEYLDISTDG--TGI 237

Query: 241 KVTMVMERP----NDVGILPGMAGRVSL---MAP--SGSATVIPTSALFAEQGGK--YVW 289
            VT+ ++ P        + PG    + L   +AP        +P SA+F +   K  YVW
Sbjct: 238 PVTITIDDPAFDRAVYDVKPGFTCNIRLASDIAPFIEEKLMNVPLSAVFGDSENKNTYVW 297

Query: 290 RVDDAGLVSKAAVTL-----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVRE 336
            V D   VS+  VT+          +  GL   + ++I+GV  + EG +V+E
Sbjct: 298 VVKD-NRVSRREVTVYSPTGEANLLISKGLKPDETVVIAGVYQLVEGQRVKE 348