Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., efflux transporter, RND family, MFP subunit from Bacteroides ovatus ATCC 8483

 Score =  115 bits (287), Expect = 2e-30
 Identities = 92/333 (27%), Positives = 155/333 (46%), Gaps = 14/333 (4%)

Query: 12  STLLVGCGKELPPVPEPDSRPA-KLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQ 70
           + LL  CG+    V   DS+PA K+ TV   +   + QFP    A     L+FRV G +Q
Sbjct: 13  AVLLTSCGQR---VQNTDSKPAVKIDTVLSADRQIALQFPGRVKAAQDISLSFRVSGTIQ 69

Query: 71  TIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFD 130
            + V  G  V+KG++LA L+P +Y +    A A +Q    + +R   L ++ V +    D
Sbjct: 70  YMHVNDGAYVRKGQLLAELDPTDYQIQLDAAEAEYQSVKAEAERVMALYKENVTTPDAND 129

Query: 131 QAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLK 190
           +A        A +  AK  L YT+L AP+ G +     + +E VAA   V++I +    +
Sbjct: 130 KAVYGLRQITAKYNHAKDQLAYTRLYAPFSGYVQKRLFDSHETVAAGMPVVSIISEGSPE 189

Query: 191 VQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPN 250
           V+  LP     R  +     +  FD +P+++Y L+   +  +A++         + +   
Sbjct: 190 VEINLPAVEYIR-RQQFTRYYCTFDIYPHQRYALELISVTPKANANQLYTMRLQLKKEDK 248

Query: 251 DVGILPGMAGRVSLMAPSGSA--TVIPTSALFAEQGGKYVWRVD-DAGLVSKAAVT---- 303
            V   PGM   V++    G      +P  A+  E G   ++  D  +  + +  VT    
Sbjct: 249 QVVPSPGMNTMVTIECSEGDVRNLSVPGGAILRENGRTSIFLYDASSHAIRRCDVTVTRL 308

Query: 304 LNEQRQVLTG--LNDGDRIIISGVSGVTEGIKV 334
           L++ R ++T   +N GD ++ SGV  V EG +V
Sbjct: 309 LSDGRCLITSGEVNPGDLVVASGVHHVKEGEQV 341