Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., Multidrug transporter MdtA from Alteromonas macleodii MIT1002

 Score =  100 bits (248), Expect = 7e-26
 Identities = 82/304 (26%), Positives = 135/304 (44%), Gaps = 9/304 (2%)

Query: 32  PAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNP 91
           P K   VS      + +   T  A +   +  +V   ++TI+   G +  +GE+L +LN 
Sbjct: 41  PVKTALVSSQAFPITIESLGTATANESVNITAQVTDTVKTINFEDGDKATEGELLVQLNN 100

Query: 92  DEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLR 151
            E     ++  AN   A  QF R   LRQ    SEQ  D+ QA   + +A  + A A L 
Sbjct: 101 TEERARVEELKANIDEAKRQFTRISDLRQSNATSEQLLDEQQARVKALQAQLDVALAQLN 160

Query: 152 YTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQFLLPD-HLLNRFSRDGVEA 210
             Q+ AP+ G +          V     +  +    L+KV F + + HL +      + A
Sbjct: 161 DLQIRAPFSGLLGNREISIGSLVQPGDTITTLDDISLIKVDFSIAESHLASVAKGQALSA 220

Query: 211 HMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGS 270
             V  ++P  ++  +   IDT  D  +RS +V   ++   D  + PGM   V +     +
Sbjct: 221 SSV--AYPGEEFTGKISNIDTRLDPISRSIRVRATIDN-QDNRLRPGMLLTVIVEKRVLN 277

Query: 271 ATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVTLNEQR----QVLTGLNDGDRIIISGVS 326
             V+P  AL   Q  +YV+ V D  +  +  V + E+R    Q+++GLN+GD +I  G  
Sbjct: 278 TLVLPEKALVPVQDKQYVYVVKD-NVAHQTEVVIGERRPGLVQIVSGLNEGDEVITEGTL 336

Query: 327 GVTE 330
            V +
Sbjct: 337 RVRD 340