Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  100 bits (249), Expect = 6e-26
 Identities = 86/343 (25%), Positives = 155/343 (45%), Gaps = 23/343 (6%)

Query: 13  TLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTI 72
           +LL  C +E         RP K+  +   +      +     A     L F V G++   
Sbjct: 23  SLLASCSEEKKAEAPDVVRPVKVAEIGAPDEGRKLIYSGAVKARTEMNLGFHVSGKITER 82

Query: 73  DVLAGQEVKKGEVLARLNPDEYALLEQQASANF-------QLADVQFQRAQRLRQDKVVS 125
            V  G  V  G VLARL+P +Y L   +A A+        ++ D+ ++RAQ L      S
Sbjct: 83  LVNVGDHVSPGAVLARLDPVDYKLAVTRAEADLSSARKQVEITDLAYRRAQTLAAQNATS 142

Query: 126 EQDF-------DQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQ 178
           +          DQA ++  SA++  EQA+  + Y+ L +   G ++ + A+  + V+A  
Sbjct: 143 QSALEQASLSRDQAVSSRQSAESALEQARNQVAYSDLKSDQKGIVTTVSADVGQVVSAGT 202

Query: 179 GVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTR 238
            V+ +  +   +VQ  +P+  ++ F + G +    F +        + +E+   AD ++R
Sbjct: 203 PVVTVAVDGEKEVQIAVPEMDVSHF-QPGKQVSASFWAANTIVLTGKVREVAQSADPQSR 261

Query: 239 SYKVTMVMERPNDVGILPGMAGRVSLMAPSG-SATVIPTSALFAEQGGKYVWRVD-DAGL 296
           ++ V + +  P D  +L GM   +   A +   A  +P +AL  + G K VW VD   G 
Sbjct: 262 TFSVRVSL--PEDQRVLLGMTATIEAKADNAVPAFSVPLAALGEKDGKKVVWVVDRQKGT 319

Query: 297 VSKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
           VS   V +    ++  ++  GL+ G  ++ +G   + E +KVR
Sbjct: 320 VSSRPVEVVDFSDDGARISKGLSTGVLVVSAGTQFMREDMKVR 362