Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  119 bits (299), Expect = 1e-31
 Identities = 94/360 (26%), Positives = 162/360 (45%), Gaps = 31/360 (8%)

Query: 20  LAHLLLIAGCSEPTKLE-RDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEI 78
           L     ++ C E  K + ++  P   V       SD +    V  A   +   FR++G +
Sbjct: 25  LGACFFLSACGEAQKPQAQEPRPVRTVVATNRAASDAVSLTGVVEAQNEATYGFRISGRV 84

Query: 79  SKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDS-------QYRRSQPLVEKG 131
               V  G RV  G +LA ++P D + A+ +AQA     ++       QY R + L+ +G
Sbjct: 85  IDRLVNVGDRVAPGQVLARLDPQDEQNALRSAQAALGAANANLTQTRNQYERQRQLLARG 144

Query: 132 LLAKSQFDEIA-------AQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQ 184
              ++Q+++         AQ   A A L++A+ RL FT+L+A   G++++  AE  E VQ
Sbjct: 145 FTPRAQYEQAEQAFLNARAQVDDAEARLQMAEDRLGFTELKADSAGVVTQRRAEPGEVVQ 204

Query: 185 VGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEP 244
            GQ ++ +   D  + +  +P  + +  P   E   +   +          R++E   + 
Sbjct: 205 AGQPVIEVARQDGRDAVFDVPAAMLSGLPGDPE---VTVALATDPAVTATGRVREVAPQA 261

Query: 245 DPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELD 304
           DP T TF V + L  P + L L    V        V ++    + IP  A+   +    D
Sbjct: 262 DPVTRTFRVRVGLTNPPEGLRLGTTVV------GRVMVDRGPVVEIPASALTRLN----D 311

Query: 305 KTAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVL 363
           K A  VW+++    TV+ R + + +   + V V EG+   + +V AGV  L  G KV++L
Sbjct: 312 KPA--VWVVDPKTQTVALRTIEVLRFGPASVSVGEGLKPSEIVVTAGVQALHPGQKVRLL 369