Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  102 bits (253), Expect = 2e-26
 Identities = 93/384 (24%), Positives = 162/384 (42%), Gaps = 44/384 (11%)

Query: 8   GCRMKIIRYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVS----------DKLF 57
           G R+K +         +L+AGC +         P  K A     V            +  
Sbjct: 11  GRRLKGLAALLLAGSAMLLAGCGQENPANAGEAPASKEATLARPVQVTTVSFRPRQTQKS 70

Query: 58  FPAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVI 117
           F  V  A     L+FRV G++ +  V+ G R++ G ++A ++  D +L +++A+A     
Sbjct: 71  FVGVVRARREIDLAFRVGGKVVQRLVEVGDRIEPGTVVARLDKEDLKLELESAKAEMQAA 130

Query: 118 ----------DSQYRRSQPLVEKGLLAKSQFDE--IAAQRQIARAE-----LELAKLRLS 160
                     D++YR    L  KG  + +  D   +A +  + R E     LELA+ RLS
Sbjct: 131 TANLAQTTTEDTRYRA---LTAKGAASNADLDRKSLAKEEAVGRLERAKRSLELAENRLS 187

Query: 161 FTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAK 220
           +  L     G++   SAE  + V  GQ IV +  +D  E L+ LP+   A   TA  +  
Sbjct: 188 YADLVTDAAGVVVATSAEPGQVVASGQTIVRVARLDEKEALVSLPETALADARTADAV-- 245

Query: 221 IETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHV 280
               +    G+  PA ++E + + D  + T+    SL   +  + L GM   V+ + +  
Sbjct: 246 --VTLWADPGRRIPAHLRELSPQADVTSRTYPARFSLEGADGTVAL-GMTATVTLRPK-- 300

Query: 281 GLNPLNTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGI 340
             +      +P+ A+      +     Q   +    + +  R V +A  +   V +S G+
Sbjct: 301 --DQQQVARLPLSALI-----DRGHGPQVFVVDGATHAIVARPVEIAAYTGDEVLLSGGV 353

Query: 341 NAGDRLVVAGVARLRDGMKVQVLE 364
             GD +V+ GV  L  G KV+ ++
Sbjct: 354 APGDAVVILGVQTLLPGQKVRTVQ 377