Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  110 bits (275), Expect = 6e-29
 Identities = 98/361 (27%), Positives = 157/361 (43%), Gaps = 30/361 (8%)

Query: 20  LAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEIS 79
           LA    +AGCSE           V  A       D L          ++ LSFRV G + 
Sbjct: 10  LASAAALAGCSEQAAAPAVPPRPVLTAVVQPMSRDVLEVAGTIEPQVQTDLSFRVLGRLL 69

Query: 80  KFHVKEGARVKQGDILAEIEPTDYRLAVD-------NAQARFSVIDSQYRRSQPLVEKGL 132
              V  G  V +  ++A I+ T  +LAV        NAQA+ +       R + L+E   
Sbjct: 70  ARSVNVGDVVTKDQVVAAIDDTALKLAVRSALAEVANAQAQLTNASGTEDRQRTLLETAA 129

Query: 133 LAKSQFD-----EIAAQRQIARAELELAKLR--LSFTQLRAPMDGIISRVSAEQFESVQV 185
            +++ F+       AA+  +ARA+  L K R  L + QL+A   G+++ V AE  + V  
Sbjct: 130 TSRATFETAEQGRAAAEASLARAQANLVKAREQLGYAQLKAEFAGVVTAVGAELGQVVSP 189

Query: 186 GQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPD 245
           G+ +V I   D  E ++ + +         S     +  +++    V   R++E   + D
Sbjct: 190 GRSVVTIARPDVREAVVDIGEDFIGDIRIGSPF---QLSLQLDGAPVATGRVREIAPQAD 246

Query: 246 PATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDK 305
             T T  V ++L  P +   L G  V     G     N  + + IP  A+F  DG     
Sbjct: 247 SVTRTRRVRITLDNPPEAFRL-GATVAARPAG-----NLASDLFIPGSAVFTRDGKS--- 297

Query: 306 TAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLE 364
              +VW +   D TV  +++  + AS    +V+ G+ AG RLV AGV  L +G KV++ +
Sbjct: 298 ---FVWRVTAEDRTVHAQEITASAASGDKARVTAGLEAGTRLVTAGVHSLSEGQKVRLAQ 354

Query: 365 E 365
           +
Sbjct: 355 D 355