Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., secretion protein HylD from Pseudomonas simiae WCS417

 Score =  100 bits (248), Expect = 8e-26
 Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 44/372 (11%)

Query: 14  IRYTAWLAHLLLIAGCSEPTKLERDT-LPR----VKVAQAGEKVSDKLFFPAVANAAERS 68
           +R    LA L+++ GC+       +T LPR     KV  AG + S    +  V  A   S
Sbjct: 6   LRLLTPLALLIILNGCNSKADTAAETPLPRPVLAAKVEAAGTQQSA---YTGVVAARTES 62

Query: 69  HLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYR------ 122
            L FRV+G++ +  V  G  V +GD L  ++  D+ LA+ +A+ R     +Q R      
Sbjct: 63  DLGFRVSGKVIERKVDPGQHVSRGDTLLVLDIGDFELALRSAKNRVHAAQAQLRQRRDDE 122

Query: 123 -RSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKL-------RLSFTQLRAPMDGIISR 174
            R Q L   G +++  FD+ A   ++A AEL  A+        R +++ L+A  DGII+ 
Sbjct: 123 NRYQRLASTGAVSRQIFDQSATLLRVAEAELASAQSDASQIENRRTYSVLKADGDGIITD 182

Query: 175 VSAEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSG---Q 231
           V  ++ + V  GQ +  + +  + E ++ LP+     +  A++ A     +  P G   Q
Sbjct: 183 VRVDRGQVVAEGQIVARLAHDGAREAIVNLPEN---QRDQAAQKA-----LAFPFGAPDQ 234

Query: 232 VYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIP 291
              A ++E +   DP T T+     L        L G  + V  +G            +P
Sbjct: 235 AVTATLRELSASADPTTRTYRARYVLHGAVDRFAL-GSTITVRLQGN----GQAQQTRVP 289

Query: 292 IEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGV 351
           I A+ ++           VWL+  D+ VS   V++A   +    +  G++ G  +V  G 
Sbjct: 290 IGALLDSG------QGTGVWLIGADDKVSFAPVKVASLGQEDALLDSGVSPGQVIVALGA 343

Query: 352 ARLRDGMKVQVL 363
             L  G  V++L
Sbjct: 344 HLLHSGDPVRLL 355