Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., secretion protein HlyD from Pseudomonas simiae WCS417

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 80/320 (25%), Positives = 132/320 (41%), Gaps = 46/320 (14%)

Query: 73  RVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGL 132
           RV GE+ K   +EG  VK GD+LAEI+P  Y+ A+  AQ       +Q + +Q  V++  
Sbjct: 99  RVGGELVKIAFEEGQMVKAGDLLAEIDPRSYQNALLQAQGTLMQNQAQLKNAQVDVQR-- 156

Query: 133 LAKSQFDEIAAQRQIARAELELA---------------------KLRLSFTQLRAPMDGI 171
                + ++ AQ  IA+  L+ A                     KL L FT++RAP+ G 
Sbjct: 157 -----YRDLYAQDSIAKQTLDTAEALVLQYQGTVKTNQGAVDDAKLNLEFTKIRAPISGR 211

Query: 172 IS--RVSAEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPT---ASELAKIETVVR 226
           +   +V      +      +  I     + V   LP+    T  T   A     +E   R
Sbjct: 212 VGLRQVDVGNLVAANDTTFLAVITQTQPISVAFTLPENTLETVLTRYHAGNKLPVEAWDR 271

Query: 227 VPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMA-VEVSAKGQHVGLNPL 285
               Q     ++    + D  TGT          +Q L  +    V + A   H      
Sbjct: 272 GDVKQQAVGVLQSLDNQIDVTTGTLKFKARFDNKDQALFPNQFVNVHLLADTLH------ 325

Query: 286 NTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDR 345
           N +  P  AI      +   T  +V++L+ D  V  + + +      +  + EG+ AGDR
Sbjct: 326 NVVLAPSAAI------QFGNTGTFVYVLDGDKKVKVQPLVVGDTDGDNTVIKEGLKAGDR 379

Query: 346 LVVAGVARLRDGMKVQVLEE 365
           +V+ G  RL+DG +++V+ +
Sbjct: 380 VVLEGTDRLKDGSEIEVVND 399