Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  121 bits (304), Expect = 3e-32
 Identities = 106/371 (28%), Positives = 171/371 (46%), Gaps = 40/371 (10%)

Query: 15  RYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRV 74
           R T  LA  LL+  CS+         P + +    E   +   F     A   S+L FRV
Sbjct: 3   RLTGILAASLLLVACSKEDAPPEPVRPVLSMEVKAEDQENLGRFAGTIQARYESNLGFRV 62

Query: 75  AGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQY-------RRSQPL 127
            G I++  V  GA V++G +LA ++PTD +  + +AQ   + + +QY       RR Q L
Sbjct: 63  PGRIARRVVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQEL 122

Query: 128 VEKGLLAKSQFDEIAAQRQIARAELELAKL-------RLSFTQLRAPMDGIISRVSAEQF 180
             +G+ A++Q D      +  +A L+ AK        +L + +LR    GI++  +AE  
Sbjct: 123 FNRGVGAQAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAEAG 182

Query: 181 ESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYP-----A 235
           + V  GQQ+V +   D  E +I LP  L    P          VV + +GQ+ P     A
Sbjct: 183 QVVSAGQQVVTLARPDIKEAVIDLPAGLAERLP--------PDVVFLVAGQLDPSVNTTA 234

Query: 236 RIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI 295
            ++E   +   AT T    L+L        L G A+ V+       + P   I +P+ A+
Sbjct: 235 IVREIEPQAQSATRTRRARLTLTETPPAFRL-GTAISVTLS---TAIAP--RIEVPLSAL 288

Query: 296 FNADGDELDKTAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARL 354
              DG    KT   +WLL+ +  TV  R + +         +++G+  G+R+V+AGV  L
Sbjct: 289 QEVDG----KTR--IWLLDTHSQTVQTRDISVISRDADSALLNDGVKPGERIVIAGVNSL 342

Query: 355 RDGMKVQVLEE 365
           + G KV++ E+
Sbjct: 343 KPGQKVKIDED 353