Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., antibiotic transporter from Pseudomonas simiae WCS417

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 89/354 (25%), Positives = 163/354 (46%), Gaps = 29/354 (8%)

Query: 25  LIAGCSEPTKLERDTLPRVKVA----QAGEKVSDKLFFPAVANAAERSHLSFRVAGEISK 80
           L++GC +        +P+V V     QA    S+    P    A   + +  +V G I K
Sbjct: 19  LLSGCKKEEAAPPAQIPQVGVVTIQPQAFTLTSE---LPGRTTAYRIAEVRPQVNGIILK 75

Query: 81  FHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDE 140
              KEG  VK+G  L +I+P+ Y   + +AQA  +   S   R + LV++  +++ ++D 
Sbjct: 76  RLFKEGGDVKEGQQLYQIDPSVYEATLKSAQASLTQSKSISDRYKQLVDEQAVSRQEYDT 135

Query: 141 IAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQ--QIVNIHNIDSV 198
             A R  + A ++ A++ + +T++ AP+ G I R S  +   V  GQ   +  I  +D +
Sbjct: 136 AVANRMTSEANVQTAQINVRYTKVFAPISGRIGRSSVTEGALVSNGQADAMAVIQQLDPI 195

Query: 199 EV--------LIQLPDRLYATQ--PTASELAKIETVVRVPSGQVYPARIKEFTTEPDPAT 248
            V        +++L   L + Q        AK++  +   S      +++      D  T
Sbjct: 196 YVDVTQSSAEMLKLRRDLASGQLEKAGDNAAKVKLTLEDGSAYGVDGKLEFSEVSVDQTT 255

Query: 249 GTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQ 308
           G+ T+    P P+  L L GM V    +    G+N    I  P + +      +L  T  
Sbjct: 256 GSVTLRAVFPNPDHTL-LPGMFVHAQLQ---AGVNS-KAILAPQQGVTR----DLKGTPT 306

Query: 309 YVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQV 362
            + ++N DN V +R++   +   ++  V +G+NAGDR++  G+  ++ G +V+V
Sbjct: 307 AL-VVNADNKVEQRELVANRTYGAYWLVEKGLNAGDRVITEGLQYVKPGAEVKV 359