Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  127 bits (318), Expect = 6e-34
 Identities = 103/362 (28%), Positives = 173/362 (47%), Gaps = 42/362 (11%)

Query: 23  LLLIAGCSEPTKLERDTLPRVKVA-QAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKF 81
           + L+AGC      +    P + V  Q   +  D   +P    A     L+FR+ G++SK 
Sbjct: 15  VFLLAGCGHEEAAQTTIRPAMVVQPQPSSQSMDS--YPGEVRARYEPDLAFRIGGKVSKR 72

Query: 82  HVKEGARVKQGDILAEIEPTDYRLAVD-------NAQARFSVIDSQYRRSQPLVEKGLLA 134
            V+EG RVK    LAE++P D RL ++        A+A  S++ ++  R + L+++ +++
Sbjct: 73  LVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVS 132

Query: 135 KSQFDE--------IAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVG 186
           +SQ+D         +A  +QI +AE ++A  +  +  LRAP DG++++   E  + V  G
Sbjct: 133 RSQYDNSENLYRAGVARLKQI-KAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVVSAG 191

Query: 187 QQIVNIHNIDSVEVLIQLPD----RLYATQPTASELAKIETVVRVPSGQVYPARIKEFTT 242
           Q +  +      EVLI LP+    R    QP + EL            Q +  RI+E + 
Sbjct: 192 QTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWS-------QPDQRFTGRIRELSP 244

Query: 243 EPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDE 302
             DP + TF   ++    +    L G +  V    Q  G  PL   S+P+ A+   +G  
Sbjct: 245 AADPKSRTFAARVAFTGGKVPAEL-GQSARVFI--QVDGDIPL---SVPLSALSAENG-- 296

Query: 303 LDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQV 362
               A YVW +  DNT+ +  VR+       V V EG++  D ++ AGV  L +G +V+ 
Sbjct: 297 ----ASYVWRVQPDNTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVRP 352

Query: 363 LE 364
           ++
Sbjct: 353 VD 354