Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA from Variovorax sp. SCN45

 Score = 87.4 bits (215), Expect = 8e-22
 Identities = 82/318 (25%), Positives = 143/318 (44%), Gaps = 40/318 (12%)

Query: 73  RVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNA-------QARFSVIDSQYRRSQ 125
           +V+G ++    +EG  VK+GD+LA I+P  ++ A+  A       +A+ +       R Q
Sbjct: 124 QVSGVLTAVLFQEGQMVKKGDVLATIDPQPFQNALAQATGARQRDEAQLAAARVTLSRYQ 183

Query: 126 PLVEKGLLAKSQFDEIAAQRQ-------IARAELELAKLRLSFTQLRAPMDGIISR--VS 176
            L+ +  +A+   D  AA  +       I RA    AKL L+++++ AP+ G I    V 
Sbjct: 184 TLLGQDSIARQDVDTQAALVKQLEGTVAIDRANENTAKLNLTWSRITAPVSGRIGLRPVD 243

Query: 177 AEQFESVQVGQQIVNIHNIDSVEVLIQLP-DRLYATQPTASELAKIETVV--RVPSGQVY 233
           A  + S      I  I  I  ++V   +P DR+   Q   ++ AK++     R  + ++ 
Sbjct: 244 AGNYISTGATNGIATITQITPIDVEFAIPQDRVPEVQDRLAQGAKLDATAFDRTRTRRLA 303

Query: 234 PARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPL-----NTI 288
                      D ATGT          +  L             Q V L  L     + +
Sbjct: 304 TGAFATLDNLVDTATGTVKAKARFSNADNTLF----------PNQFVNLRLLLRTVDSAV 353

Query: 289 SIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVV 348
            +P+ A+ +    +      YV++L +D+TV++R V   +AS  +V +  G+ AG+++V 
Sbjct: 354 VVPVTALRHGPNGD------YVYVLKDDSTVAQRTVTRGEASVDNVAIMSGLTAGEQVVT 407

Query: 349 AGVARLRDGMKVQVLEER 366
            G  RL+DG +VQ   +R
Sbjct: 408 EGGDRLKDGARVQTTVDR 425