Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score = 97.8 bits (242), Expect = 5e-25
 Identities = 89/330 (26%), Positives = 147/330 (44%), Gaps = 38/330 (11%)

Query: 58  FPAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVD-------NA 110
           F     A ER  +  RVAG +   H +EGA VKQGD+L  I+P  Y   V+       +A
Sbjct: 71  FSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVASA 130

Query: 111 QARFSVIDSQYRRSQPLVEKGLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQ 163
           QAR S   S+  R++ L +   +A+ +FD       E  A  + A+A L+ A+L L +TQ
Sbjct: 131 QARQSFSRSEQERAKRLWDDKAIAQREFDERVNAGREADANLRAAQASLQSARLNLGYTQ 190

Query: 164 LRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVEVLI-------QLPDRLYATQPTAS 216
           +RAP+ G I R+       V  G     +  + SV  +        Q+  R     PT S
Sbjct: 191 VRAPVSGRIGRIEVTVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDLPTGS 250

Query: 217 EL-AKIETV-VRVPS----GQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMA 270
               +IE++ V++ +    G  +  +++    + D  +GT  V  S    +  LI     
Sbjct: 251 SARGQIESIPVQMGTAGLDGTPFTGKLQLIDNQVDAKSGTVRVRASFDNKDGALI----- 305

Query: 271 VEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKAS 330
                 GQ   +  +         + +      D+  ++V ++  D+  + R+V L  + 
Sbjct: 306 -----PGQFARIR-MGQARSDSALLVSERAIGTDQNKKFVMVVGEDSKATYREVTLGASI 359

Query: 331 RSHVQVSEGINAGDRLVVAGVARLRDGMKV 360
                VS+G+ AGDR++V G+  +R G  V
Sbjct: 360 NGLRVVSKGLKAGDRVIVNGLQHIRPGALV 389