Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., efflux RND transporter periplasmic adaptor subunit from Variovorax sp. OAS795

 Score = 93.6 bits (231), Expect = 9e-24
 Identities = 95/361 (26%), Positives = 164/361 (45%), Gaps = 39/361 (10%)

Query: 27  AGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKFHVKEG 86
           A  + P   ++ T P    A A  +++    F     A +R  +  RVAG +   H +EG
Sbjct: 41  AEATAPAAAQQGT-PVSVAAVASSEINAWDEFSGRLEAVQRVDVRSRVAGAVQAVHFREG 99

Query: 87  ARVKQGDILAEIEPTDYRLAVD-------NAQARFSVIDSQYRRSQPLVEKGLLAKSQFD 139
           A VKQGD+L  I+P  Y   V+       +AQAR +   S+  R++ L ++  +A+ ++D
Sbjct: 100 ALVKQGDLLITIDPAPYAAEVERAEAQVASAQARQAFSRSEQERAKRLWDQQAIAQREYD 159

Query: 140 E-IAAQRQ------IARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNI 192
           E + A R+       ++A L+ A+L L +TQ+RAP+ G I ++       V  G     +
Sbjct: 160 ERVNASREADANLRASQASLQSARLNLGYTQVRAPVSGRIGKLEVTVGNLVAAGPGAPVL 219

Query: 193 HNIDSVEVLI-------QLPDRLYATQPT-ASELAKIETV-VRVPS----GQVYPARIKE 239
             + SV  +        Q+  R     P+ AS   +IE++ V++ +    G  +  +++ 
Sbjct: 220 TTLVSVSPIYASFDADEQVITRALKDLPSGASARGQIESIPVQMGTSGFDGTPFIGKLQL 279

Query: 240 FTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNAD 299
              + D  +GT  V  S    +  LI  G    +      +G    +T  +  E      
Sbjct: 280 IDNQVDARSGTVRVRASFDNKDGALI-PGQFARI-----RMGQARNDTALLVSERAIGT- 332

Query: 300 GDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMK 359
               D+  ++V ++  DN    R+V L  +      VS+G+ AGDR+VV G+  +R G  
Sbjct: 333 ----DQNKKFVMVVGEDNKAMYREVTLGASINGLRVVSKGLKAGDRVVVNGLQHIRPGAL 388

Query: 360 V 360
           V
Sbjct: 389 V 389