Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  166 bits (419), Expect = 1e-45
 Identities = 104/366 (28%), Positives = 200/366 (54%), Gaps = 16/366 (4%)

Query: 1   MNGSRSEGCRMKIIRYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQ----AGEKVSDKL 56
           MN S +     K    +A +A  LL+AGC E  ++     P VK A     A ++ SD L
Sbjct: 1   MNPSFTRSMAAKRSLLSAVIASALLLAGCGEAPQISAPA-PVVKPALTEIVASQRASD-L 58

Query: 57  FFPAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSV 116
            F  V  AA+R+ L+FR++G ++   VKEG +VK+G +LA ++  D + A++ AQ     
Sbjct: 59  TFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKN 118

Query: 117 IDSQYRRSQPLVEK-GLLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRV 175
            + +YRR++ + EK   ++K++ D++  +  +A+  +E AK +L +TQ+ AP DG+IS  
Sbjct: 119 TEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEK 178

Query: 176 SAEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPA 235
           + E F  VQ  Q I+ + +++ +EV I++P R+  +         I  +  +P+ Q +  
Sbjct: 179 TIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLS--GVRNTRAIAELSAIPN-QQFDL 235

Query: 236 RIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI 295
           +++ ++T+P   + T++V L     +   ++ GM+ +V         +    I++P+ A+
Sbjct: 236 KLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPA-DENTLITLPLTAL 294

Query: 296 FNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLR 355
                   ++  Q+VW++N  N   KR V +    +  V +++ +  G+++++AGV+ +R
Sbjct: 295 VPD-----NQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVR 349

Query: 356 DGMKVQ 361
           +GM V+
Sbjct: 350 EGMTVR 355