Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  163 bits (412), Expect = 7e-45
 Identities = 114/348 (32%), Positives = 178/348 (51%), Gaps = 24/348 (6%)

Query: 25  LIAGCSE--PTKLERDTLP-RVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKF 81
           L+ GC +  P   E D+ P ++     G     + F PA   A +R+ L+FRV G++   
Sbjct: 14  LLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQF-PATTAAGDRAVLAFRVPGQLQTI 72

Query: 82  HVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDEI 141
            V  G  VK+G++LA + P +Y L    A A F + D Q++R+Q L +  ++++  FD+ 
Sbjct: 73  DVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQA 132

Query: 142 AAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVEVL 201
            A    A+A  E AK  L +TQL AP DG IS + AEQ+E V   Q ++NI     ++V 
Sbjct: 133 QANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQ 192

Query: 202 IQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPE 261
             LPD L      + +  +   V      + YP + +E  TE D  T ++ VT+ +  P 
Sbjct: 193 FLLPDHL--LNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPN 250

Query: 262 QELILDGMAVEVSAKGQHVGLNPLNTIS-IPIEAIFNADGDELDKTAQYVWLLNNDNTVS 320
              IL GMA  VS       + P  + + IP  A+F   G       +YVW +++   VS
Sbjct: 251 DVGILPGMAGRVSL------MAPSGSATVIPTSALFAEQG------GKYVWRVDDAGLVS 298

Query: 321 KRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKV-QVLEERG 367
           K  V L        QV  G+N GDR++++GV+ + +G+KV + ++ERG
Sbjct: 299 KAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVREWVKERG 342