Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  125 bits (313), Expect = 2e-33
 Identities = 100/357 (28%), Positives = 170/357 (47%), Gaps = 30/357 (8%)

Query: 23  LLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKFH 82
           LLL+  C +  ++ RD    V V + G        +     +A  S + F VAG I +  
Sbjct: 12  LLLLPACRDEPQV-RDERRAVAVQRIGADAGTSTSYAGEIRSAFESQIGFEVAGRIVERR 70

Query: 83  VKEGARVKQGDILAEIEPTDYRLAVDNAQARFS-------VIDSQYRRSQPLVEKGLLAK 135
           V  G+ V  G  L  ++ +DY  A+D+A A+ S       V  +   RS+ L+++G ++ 
Sbjct: 71  VDLGSSVHAGQTLLRLDNSDYARALDSAAAQSSSARTAAAVQQADLARSRELLKQGFISP 130

Query: 136 SQFDE-----IAAQRQI--ARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQ 188
           ++FD+     I AQ Q+  A A+   A  +LS T L AP  G+++++  E  + V  GQ 
Sbjct: 131 AEFDQQKAAAIQAQAQLRAAGAQSGTASAQLSRTVLTAPRAGVVTQIQGEVGQVVGAGQT 190

Query: 189 IVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPAT 248
           IV + +    E+ + LP+       +AS L+     V    G+ Y AR++  +   DPAT
Sbjct: 191 IVTLADPSRPEIAVALPEGSLDRIRSASRLS---VSVWSSPGRRYAARLRSISGAADPAT 247

Query: 249 GTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQ 308
            TF   LS+  P Q L++ G   E+  +G          + +P+ A+  ++G        
Sbjct: 248 RTFAARLSVDAPAQALLM-GETAELRVEGAAGDA----AVRVPLTAVLQSNG------RA 296

Query: 309 YVWLLNNDN-TVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLE 364
             W+L+     V  R V++  A    + +  G+  G+ +V AGV  LR G KV++++
Sbjct: 297 QAWVLDRRTMVVQPRAVQIGAAQGDMLTIRSGLKPGETIVTAGVHLLRAGEKVRIVQ 353