Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

 Score =  111 bits (278), Expect = 3e-29
 Identities = 104/371 (28%), Positives = 174/371 (46%), Gaps = 40/371 (10%)

Query: 15  RYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRV 74
           R    L+  +L+ GC+   +      P + V    +  S    F     A   S L FRV
Sbjct: 3   RLLLMLSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRV 62

Query: 75  AGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQY-------RRSQPL 127
           +G I++  +  GA+VK GD LA ++PTD +  +  A+   + + +Q+       RR Q L
Sbjct: 63  SGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQL 122

Query: 128 VEKGLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQF 180
            ++G+ A++Q D         +A  + AR+ +  A+ +L ++ LRA    +I+   AE  
Sbjct: 123 YDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAG 182

Query: 181 ESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYP-----A 235
           ++V  GQ +V +   D  E +I LP  L      A +L+K  T     + Q+ P     A
Sbjct: 183 QTVTAGQAVVTLARPDVKEAVIDLPIGL------AEQLSKGLTF--TVASQLDPTINTTA 234

Query: 236 RIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI 295
            ++E   + D  T T    L+L        L G A+ V+   +   ++P +   +P+ A+
Sbjct: 235 SLRELEPQADATTRTRRARLTLASTPAAFHL-GTAISVTLSSE---VSPRS--ELPLSAL 288

Query: 296 FNADGDELDKTAQYVWLLNNDN-TVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARL 354
              DG    KT   VW+++  N TV+ R V L   +   + +S G+  G+R+V AGV  L
Sbjct: 289 LERDG----KT--QVWVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSL 342

Query: 355 RDGMKVQVLEE 365
           + G KV   E+
Sbjct: 343 KPGQKVTFDED 353