Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score =  100 bits (248), Expect = 1e-25
 Identities = 93/342 (27%), Positives = 153/342 (44%), Gaps = 54/342 (15%)

Query: 56  LFFPAVAN--AAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQAR 113
           L++ A+    A    ++  RVAGE+ K H KEG RVK GD+LAEI+P  YR+A+  A+  
Sbjct: 79  LYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGT 138

Query: 114 FSVIDSQYRRSQ-------PLVEKGLLAKSQFDEIAAQRQIA---------RAELELAKL 157
            +   +Q + +Q        L  +  +AK   D   A+ Q+A         +A++  A+L
Sbjct: 139 LAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLD--TAEAQVAQFQGLVKTNQAQVNDARL 196

Query: 158 RLSFTQLRAPMDGIISRVSAEQFE-----SVQVGQQIVNIHNIDSVEVLIQLPDRLYAT- 211
            L FTQ+RAP+ G   RV   Q +     +      +V I   + + V   LP+   +T 
Sbjct: 197 NLDFTQIRAPISG---RVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTLPETELSTV 253

Query: 212 --QPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGM 269
             +  +     +E   R  S       +     + D  TGT          +  L     
Sbjct: 254 LERYRSGASLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKDLALF---- 309

Query: 270 AVEVSAKGQHVGLNPL-----NTISIPIEAI-FNADGDELDKTAQYVWLLNNDNTVSKRQ 323
                   Q V +  L       +  P  AI F  DG        + +++N  +TV+ R+
Sbjct: 310 ------PNQFVNVRLLADTLKQVVMAPAAAIQFGNDG-------TFAYVVNEQSTVNVRK 356

Query: 324 VRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLEE 365
           +++  +   +  + +G+ AGDRLV+ G  RLR+G KV+V+E+
Sbjct: 357 LKVGASDGENSVILDGLKAGDRLVLEGTDRLREGTKVEVVED 398