Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

 Score =  110 bits (275), Expect = 6e-29
 Identities = 104/365 (28%), Positives = 156/365 (42%), Gaps = 34/365 (9%)

Query: 24  LLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKFHV 83
           L+  G S P K  RDT P VK     +  +    F  V  A  +S L FRV+G+I +  V
Sbjct: 17  LVACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVSGKILQRLV 76

Query: 84  KEGARVKQGDILAEIEPTDYRL-------AVDNAQARFSVIDSQYRRSQPLVEKGLLAKS 136
             G  VK+G  L  ++P D  L       AV  A+AR         R + LV  G ++ S
Sbjct: 77  DTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVADGAVSAS 136

Query: 137 QFDEIAAQRQIARAEL-------ELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQI 189
            +D+I A    A+A+L       ++A+    +  L A  DG++    AE  + V  GQ +
Sbjct: 137 SYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVSAGQAV 196

Query: 190 VNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATG 249
           V +      E ++ LP+ L   +P     A + T+   P+ Q  PA+++  +   DP T 
Sbjct: 197 VRLARAGQREAVVYLPETL---RPAPGSTA-LATLFGKPA-QAVPAKLRLLSDAADPITR 251

Query: 250 TFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQY 309
           TF     L  P     L G  + +                IPI A+F+            
Sbjct: 252 TFEARYVLTGPLASAPL-GATITLEIPDTD---TDFEAKQIPIGALFDPG------NGAG 301

Query: 310 VWLL-NNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKV----QVLE 364
           VW++      VS R V +   S     V   ++AGDR+V  G   LRDG++V    Q  +
Sbjct: 302 VWVIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVMEQAQTAQ 361

Query: 365 ERGHE 369
             GH+
Sbjct: 362 VMGHQ 366