Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  123 bits (309), Expect = 7e-33
 Identities = 104/363 (28%), Positives = 172/363 (47%), Gaps = 40/363 (11%)

Query: 21  AHLLLIAGCSEPTKLERDTLPRVKVA-QAGEKVSDKLFFPAVANAAERSHLSFRVAGEIS 79
           A  LL+A C +         P + V  Q  E  +D   +P    A     L+FR+ G++S
Sbjct: 13  AAALLLAACGQEAAPPAAPRPALVVQPQPAEAAADS--YPGEVRARFEPELAFRIGGKVS 70

Query: 80  KFHVKEGARVKQGDILAEIEPTDYRLAVD-------NAQARFSVIDSQYRRSQPLVEKGL 132
           K  V+EG RVK    LAE++P D RL ++        A+A  +++ ++  R Q L+E+ +
Sbjct: 71  KRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDRYQKLLERQM 130

Query: 133 LAKSQFDEI-------AAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQV 185
           ++ SQ+D          A+ + A+AE ++A  +  +  LRAP  G+I++   E  + V  
Sbjct: 131 VSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKRQVEVGQVVAA 190

Query: 186 GQQIVNIHNIDSVEVLIQLPDRLYAT----QPTASELAKIETVVRVPSGQVYPARIKEFT 241
           GQ +  +      EV I LP++ +A     QP + EL         P  + +  RI+E +
Sbjct: 191 GQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWS------HPQAR-FQGRIRELS 243

Query: 242 TEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGD 301
              DP + TF   ++         L   A    AK    GL PL   ++P+ A+   +G 
Sbjct: 244 PAADPRSRTFAARIAFTTAAVPAELGQSARVFIAKD---GLIPL---AVPLSAVTAENGQ 297

Query: 302 ELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQ 361
                  YVW +N ++ + +  VRL       V V EG++ GD +V AG   LR+G +V+
Sbjct: 298 ------AYVWRVNKESRLERATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVR 351

Query: 362 VLE 364
            ++
Sbjct: 352 PVD 354