Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score =  106 bits (264), Expect = 1e-27
 Identities = 99/354 (27%), Positives = 165/354 (46%), Gaps = 29/354 (8%)

Query: 25  LIAGCSEPTKLERDTLPRVKVA----QAGEKVSDKLFFPAVANAAERSHLSFRVAGEISK 80
           L++GC +         P+V V     QA    S+    P   +A   + +  +V G I K
Sbjct: 19  LLSGCKKEEAAPAAQAPQVGVVTIQPQAFTLTSE---LPGRTSAYRVAEVRPQVNGIILK 75

Query: 81  FHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDE 140
              KEG+ VK+G  L +I+P  Y   + NA+A      S   R + L+++  ++K ++D+
Sbjct: 76  RLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSLAERYKQLIDEQAVSKQEYDD 135

Query: 141 IAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQ--QIVNIHNIDSV 198
             A+R  A A L+ A++ L +T++ AP+ G I R S  +   V  GQ   +  I  +D +
Sbjct: 136 ANAKRLQAEASLKSAQIDLRYTKVLAPISGRIGRSSFTEGALVSNGQTDAMATIQQLDPI 195

Query: 199 EV--------LIQLPDRLYA--TQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPAT 248
            V        L++L   L +   Q      A ++ V+   S      R++      D  T
Sbjct: 196 YVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLEDGSLFKQEGRLEFSEVAVDETT 255

Query: 249 GTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQ 308
           G+ T+    P P+  L L GM V    K    G+N  N I  P + +      +L K A 
Sbjct: 256 GSVTLRALFPNPDHTL-LPGMFVHARLK---AGVN-ANAILAPQQGVTR----DL-KGAP 305

Query: 309 YVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQV 362
              ++N +N V  RQ++ ++   S   + EG+N GDRL+  G+  +R G++V+V
Sbjct: 306 TALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVKV 359