Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Pseudomonas sp. SVBP6

 Score =  130 bits (326), Expect = 7e-35
 Identities = 104/362 (28%), Positives = 177/362 (48%), Gaps = 42/362 (11%)

Query: 23  LLLIAGCSEPTKLERDTLPRVKVA-QAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKF 81
           +LL+A C + +  +    P + V  Q     +D   +P    A     L+FR+ G++SK 
Sbjct: 15  VLLLAACGQESAPQTSLRPAMVVQPQPASAAADS--YPGEVRARFEPELAFRIGGKVSKR 72

Query: 82  HVKEGARVKQGDILAEIEPTDYRLAVD-------NAQARFSVIDSQYRRSQPLVEKGLLA 134
            V+EG RVK    LAE++P D RL ++        A+A  S++ ++  R + L+++ +++
Sbjct: 73  LVEEGQRVKAEQALAELDPQDVRLQLEASRAQLAAAEANLSLVKAERDRYKTLLDRQMVS 132

Query: 135 KSQFDE--------IAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVG 186
           +SQ+D         +A  +Q+ RAE ++A  +  +  LRA  DG+I++   E  + V  G
Sbjct: 133 RSQYDNAENLYRAGLARLKQV-RAEFDVAGNQAEYAVLRASQDGVIAKRQVEVGQVVSAG 191

Query: 187 QQIVNIHNIDSVEVLIQLPD----RLYATQPTASELAKIETVVRVPSGQVYPARIKEFTT 242
           Q +  +      EVLI LP+    R    QP + EL            Q +  RI+E + 
Sbjct: 192 QTVFTLATDGEREVLIGLPEQHFGRFKVGQPVSVELWS-------QPDQRFNGRIRELSP 244

Query: 243 EPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDE 302
             DP + TF   ++    +    L G +  V    QH    PL   ++P+ A+   +G  
Sbjct: 245 SADPRSRTFAARIAFTAGKVPAEL-GQSARVFI--QHTEQIPL---AVPLSALTAENGQ- 297

Query: 303 LDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQV 362
                 YVW ++ +NT+ +  VR+     S V V EG+NA D +V AGV  L++G +V+ 
Sbjct: 298 -----TYVWRVDANNTLKRVPVRVGAYGESSVPVLEGLNASDWVVAAGVHVLQEGQQVRP 352

Query: 363 LE 364
           ++
Sbjct: 353 VD 354