Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 93.6 bits (231), Expect = 8e-24
 Identities = 83/316 (26%), Positives = 148/316 (46%), Gaps = 27/316 (8%)

Query: 60  AVANAAERSHLSFR--VAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVI 117
           AV     R  ++ +   +G +++    +GARVK G +L +++ T  R  +  AQA+ S+ 
Sbjct: 70  AVGTLRSRQSVTLKPETSGRVARIVFADGARVKAGQLLVQLDDTLQRAELSQAQAQLSIA 129

Query: 118 DSQYRRSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSA 177
            +  +R+Q LV +  +A+   +E  A  Q+A A++ LA  RL   ++ AP  G +   S 
Sbjct: 130 RANLKRNQELVAQNFVAQRVVEESQANLQVAEAQVALADARLQRMRITAPFAGTVGLRSI 189

Query: 178 EQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARI 237
                V+ G  +VN+ +   + V  +LP+R Y +Q    ++ +++ +  +P+    P   
Sbjct: 190 NLGAYVKDGDSLVNLEDTSMLTVDFRLPER-YQSQLAPGQVVQVQ-LDALPN---RPFEA 244

Query: 238 KEFTTEP--DPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI 295
           K    +P  D    + +V   +P     ++  GM   V        +N    + +P EA+
Sbjct: 245 KVLAVDPLLDANGRSISVRAVMPPAADNVLRPGMFARVLIV---FSVNE-RALVVPEEAL 300

Query: 296 FNADGDELDKTAQYVWLLN--NDNTVSKR-----QVRLAKASRSHVQVSEGINAGDRLVV 348
               G       QY ++L+   +    KR     +V L     S V+V  G+  GD +V+
Sbjct: 301 VPQAG------KQYAYVLDEQGEGDAKKRLSRRVEVALGARRGSEVEVVSGLQQGDAVVI 354

Query: 349 AGVARL-RDGMKVQVL 363
           AG  RL RDG  V+V+
Sbjct: 355 AGQQRLQRDGTAVRVV 370