Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  105 bits (262), Expect = 2e-27
 Identities = 100/360 (27%), Positives = 159/360 (44%), Gaps = 39/360 (10%)

Query: 24  LLIAGCSEPTKLERDTLPRVKVAQAGE-KVSDKLFFPAVANAAERSHLSFRVAGEISKFH 82
           L ++ CS P   E + +  VK+   G   V  +  +     A   S L FRV G++    
Sbjct: 14  LALSACSRPPAPE-EPIRSVKLLTVGTGNVVARSEYAGEVRARTESRLGFRVGGKLVARP 72

Query: 83  VKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQ-------YRRSQPLVEKGLLAK 135
            + G RVK G +LA+++  D  L+   AQA+ S   +Q        +R Q L  +G ++ 
Sbjct: 73  AEVGQRVKPGQLLAQLDAQDLALSSQAAQAQVSAAQTQRDLAAADLKRYQDLQAQGFVSG 132

Query: 136 SQFDEIAAQRQIARAELELAKL-------RLSFTQLRAPMDGIISRVSAEQFESVQVGQQ 188
           ++ +   A  Q A A L  AK        +  + +L A  DG++  V AE  + V  G  
Sbjct: 133 AEIERRQATLQSAEATLRQAKAQGAVQGNQAGYARLLADGDGVVLSVEAEVGQVVAAGTP 192

Query: 189 IVNIHNIDSVEVLIQLP-DRLYATQPTASELAKIETVVRVPSGQVYP--ARIKEFTTEPD 245
           +V +    + +V+I +P DR+   +P A+   ++       S    P  A ++E     D
Sbjct: 193 VVRVARDGARDVVIAVPEDRVAQIRPGATAQVRLWAGAGAASAAAAPLEATVREVAASAD 252

Query: 246 PATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPL----NTISIPIEAIFNADGD 301
            AT T+ V LSLP        DG AV + A   +V L         I +P  A+  AD  
Sbjct: 253 AATRTYQVKLSLP--------DGAAVPLGATA-YVTLGGAVAGPAVIKLPTSALMRAD-- 301

Query: 302 ELDKTAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKV 360
                   VW+ +    TV  R V++A A  + + + +G+  G+ +V  GV  L  G KV
Sbjct: 302 ----QGSAVWVFDAAAGTVQPRPVKVAGADGNEMVILDGLKPGEEVVATGVHVLSPGQKV 357