Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., Multidrug transporter MdtA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  108 bits (269), Expect = 3e-28
 Identities = 87/331 (26%), Positives = 154/331 (46%), Gaps = 52/331 (15%)

Query: 64  AAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDS---- 119
           AA    +  RV G++   H +EG +V  GD+LA+I+P+ +++A+  AQ + +  ++    
Sbjct: 83  AANTVTVRSRVDGQLIALHFQEGQQVNAGDLLAQIDPSQFKVALAQAQGQLAKDNATLAN 142

Query: 120 ---QYRRSQPLVEKGLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMD 169
                 R Q L +  L+++ + D       E     +   A +  A+L+L ++++ AP+ 
Sbjct: 143 ARRDLARYQQLAKTNLVSRQELDAQQALVNETQGTIKADEANVASAQLQLDWSRITAPVS 202

Query: 170 GIISRVSAEQFESVQVGQQI--------VNIHNIDSVEVLIQLPDRLYATQPTASELAK- 220
           G   RV  +Q   V VG QI        V I     ++++  LP+   AT   A +  K 
Sbjct: 203 G---RVGLKQ---VDVGNQISSSDTAGIVVITQTHPIDLIFTLPESDIATVVQAQKAGKA 256

Query: 221 --IETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQ 278
             +E   R  S ++    +     + DP TGT  +       +  L             Q
Sbjct: 257 LVVEAWDRTNSHKLSEGVLLSLDNQIDPTTGTIKIKARFTNQDDTLF----------PNQ 306

Query: 279 HVGLNPL-----NTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSH 333
            V    L     N + +P  A+      ++     +VW+LN++N VSK++V++      +
Sbjct: 307 FVNARMLVDTEQNAVVVPAAAV------QMGNEGHFVWVLNDENNVSKKRVKIGIQDNRN 360

Query: 334 VQVSEGINAGDRLVVAGVARLRDGMKVQVLE 364
           V +S G++AGDR+V  G+ RL +G KV+V+E
Sbjct: 361 VVISAGLSAGDRVVTDGIDRLTEGAKVEVVE 391