Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score =  102 bits (255), Expect = 1e-26
 Identities = 85/325 (26%), Positives = 144/325 (44%), Gaps = 40/325 (12%)

Query: 64  AAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDS---- 119
           AA    +  RV G++   H +EG +VK GD+LAEI+P+ +++A+  AQ + +   +    
Sbjct: 84  AANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKATLAN 143

Query: 120 ---QYRRSQPLVEKGLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMD 169
                 R Q L +  L+++ + D       E     +   A +  A+L+L ++++ AP+D
Sbjct: 144 ARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITAPVD 203

Query: 170 GIISRVSAEQFESVQVGQQ--IVNIHNIDSVEVLIQLPDRLYATQPTASELAK---IETV 224
           G +     +    +  G    IV I     ++++  LP+   AT   A +  K   +E  
Sbjct: 204 GRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVVEAW 263

Query: 225 VRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNP 284
            R  S ++    +     + D  TGT  V       +  L             Q V    
Sbjct: 264 DRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFNNQDDALF----------PNQFVNARM 313

Query: 285 L-----NTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEG 339
           L     N + IP  A+      ++     +VW+LN++N VSK  V         V +  G
Sbjct: 314 LVDTEQNAVVIPTAAL------QMGNEGHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAG 367

Query: 340 INAGDRLVVAGVARLRDGMKVQVLE 364
           I+AGDR+V  G+ RL +G KV+V+E
Sbjct: 368 ISAGDRVVTDGIDRLTEGAKVEVVE 392