Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score = 90.1 bits (222), Expect = 8e-23
 Identities = 79/331 (23%), Positives = 142/331 (42%), Gaps = 44/331 (13%)

Query: 59  PAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVID 118
           P    A     L  R  G I+K H ++G  VK+GD+L E++  + R A+  AQA     +
Sbjct: 41  PGRIEAIHTVELRARTEGAIAKIHFRDGQYVKKGDLLFELDDAEPRAALRLAQAEVRSAE 100

Query: 119 SQYRRSQ-------PLVEKGLLAKSQFDEIAAQRQIARAELELAKLR-------LSFTQL 164
           +  R++Q        L     +++   D    QR +A A LE AK R       L++T++
Sbjct: 101 ATLRQAQQQLSRFESLGSSNAISRHDVDNARMQRDVASAALEQAKARLETRNVTLNYTRI 160

Query: 165 RAPMDGII--SRVSAEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIE 222
            +P+DG +  SR       +   G  +V +  +D + +   L +  +AT+  A + A I 
Sbjct: 161 TSPIDGRVGHSRFHVGSLVNPASG-VLVEVVQLDPIRIAFALEEGAFATK--AGQHADIS 217

Query: 223 TVVRV------PSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAK 276
            + +        +GQ     +       DP T +  +      P  +L+  G        
Sbjct: 218 AMKQAWQAFIDSNGQRVIGELTSVDNRIDPRTASVMLRAEFANPRHQLLPGGSV------ 271

Query: 277 GQHVGLNPLN---TISIPIEAI-FNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRS 332
             +V L P +    +++P  A+  N DG        + W++N D     R +++A     
Sbjct: 272 --NVTLRPASEQPVLTLPAAAVQQNGDG-------FFAWVVNADGKAEMRPLKVAGQIGQ 322

Query: 333 HVQVSEGINAGDRLVVAGVARLRDGMKVQVL 363
             +++ G+  G+R +  G  R++ G  VQ+L
Sbjct: 323 QFRITSGVKPGERAITDGAQRVQPGAAVQIL 353