Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score = 91.3 bits (225), Expect = 4e-23
 Identities = 98/374 (26%), Positives = 164/374 (43%), Gaps = 43/374 (11%)

Query: 13  IIRYTAWLAHLLL---------IAGCSEPTKLERDTLPRVKVAQAGE-KVSDKLFFPAVA 62
           + R  +WL  L L         + GC +  + + D    V+    G  +    L      
Sbjct: 19  VARTLSWLHFLPLALLALAIFPLTGCGDKHENKPDPARAVRYVVVGAAQTLPALERTGEI 78

Query: 63  NAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFS------- 115
           +A + + LSFR  G I    V  G RV  G +LA ++ T  +  +D A A +        
Sbjct: 79  HAHDETTLSFRTGGRILTRSVDIGDRVTAGQLLATLDNTTGQNQLDGAAADYEGAKASAQ 138

Query: 116 VIDSQYRRSQPLVEKGLLAKSQFDEIAAQRQIARAELEL-------AKLRLSFTQLRAPM 168
           V      R Q L+  G +A++Q D   A   +ARA L+        A+  L +T+L AP 
Sbjct: 139 VAALNVSRMQKLMPTGAIARTQLDSARADWLVARARLKSSEAAWRNARESLGWTRLIAPQ 198

Query: 169 DGIISRVSAEQFESVQVGQQIVNIHNIDSVEVLIQL--PDRLYATQPTASELAKIETVVR 226
            G+I+ V+A   + V  GQ ++ +   ++ +V   +  PD   A  P      ++ +++ 
Sbjct: 199 AGVITAVNASAGQVVSDGQSVLTLATGEARDVAFDIATPD---AIPPLDKAFLRV-SLLS 254

Query: 227 VPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLN 286
            PS Q   A +++ T + DP T T+ V  +L  P   + L G +V V+        +   
Sbjct: 255 DPSVQA-SAALRDITPQADPQTRTWRVRATLQNPPAAMAL-GASVTVTLPS-----SAPR 307

Query: 287 TISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRL 346
             ++P  A+        DK A  V+++   +    R V  A  + S V ++ G+  GDR+
Sbjct: 308 GYTLPASALTRVG----DKPA--VFVITPQSRAQLRAVVPASYTASSVMIASGLEPGDRV 361

Query: 347 VVAGVARLRDGMKV 360
           + AGV+ LR G  V
Sbjct: 362 ITAGVSTLRSGEPV 375