Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score =  127 bits (318), Expect = 6e-34
 Identities = 87/318 (27%), Positives = 159/318 (50%), Gaps = 13/318 (4%)

Query: 58  FPAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVI 117
           FPA   + + + LSF+ AG+I    V++GA +KQG  LA +   + +  V++ Q   ++ 
Sbjct: 15  FPARIESGDATDLSFKRAGQIEALDVRQGAAIKQGQQLARLNAREAQQRVNDRQTAATLA 74

Query: 118 DSQYRRSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSA 177
             Q+ R Q L  +  ++K++ D   A R  A A L++A+  L+   L AP  G  + V  
Sbjct: 75  QRQFDRFQTLAGRQAISKAEMDVQRANRDSANAALQIAREELNQMTLVAPFSGTAASVHV 134

Query: 178 EQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPS--GQVYPA 235
              + V  GQ I  +   D ++V+  +P+ L+ T    +  A+   VVR+ +   + + A
Sbjct: 135 RNHQVVSPGQPIATLTRTDLLDVVFSIPENLFKTFDIRN--AQYRPVVRINAMPDREFTA 192

Query: 236 RIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMA--VEVSAKGQHVGLNPLNTISIPIE 293
             KE +   D  T T+ V L++P P+    + G++  V ++      G +    + +P+E
Sbjct: 193 VYKEHSGSSDSNTLTWQVILTMPRPDDFPAVGGVSGTVTINLTNLPAGAD-AQALVVPVE 251

Query: 294 AIFNADGDELDKTAQYVWLLNNDNT---VSKRQVRLAKASRSHVQVSEGINAGDRLVVAG 350
           A+FN +     +   +VW++  +     +  R+V + + S   V ++ G+ AG+R+V AG
Sbjct: 252 AVFNPNNS--PRNEPHVWVVTGEGDALHLEDRKVSVGQVSTEGVVITSGLKAGERVVAAG 309

Query: 351 VARLRDGMKVQV-LEERG 367
           V  L     V++   ERG
Sbjct: 310 VGELHANQPVRIWTRERG 327