Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score =  103 bits (257), Expect = 8e-27
 Identities = 82/320 (25%), Positives = 148/320 (46%), Gaps = 30/320 (9%)

Query: 64  AAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYR- 122
           AA    +  RV G++   H +EG +VK GD+LAEI+P+ +++A+  AQ + +   +    
Sbjct: 84  AANTVTVRSRVDGQLMAIHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKATLAN 143

Query: 123 ------RSQPLVEKGLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMD 169
                 R Q LV+  L+++ + D       E     +   A +  A+L+L ++++ AP+D
Sbjct: 144 ARRDLVRYQQLVKTNLVSRQELDTQQSLVSETQGTIKADEAAVASAQLQLDWSRITAPID 203

Query: 170 GIISRVSAEQFESVQVGQQ--IVNIHNIDSVEVLIQLPDRLYATQPTASELAK---IETV 224
           G +     +    +  G    IV I     ++++  LP+   AT   A +  K   +E  
Sbjct: 204 GRVGLKQVDIGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKGLVVEAW 263

Query: 225 VRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNP 284
            R    ++    +     + D  TGT  + L      Q+   D +        + +    
Sbjct: 264 DRSNKQKLSEGSLLSLDNQIDTTTGT--IKLKARFNNQD---DALFPNQFVNARMLVATE 318

Query: 285 LNTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGD 344
            N + IP  A+      ++     +VW+LN+DN VSK  V+        V ++ G++AG+
Sbjct: 319 ENAVVIPTAAL------QMGNEGNFVWVLNDDNKVSKHLVKTGIQDSQTVVIAAGLSAGE 372

Query: 345 RLVVAGVARLRDGMKVQVLE 364
           R+V  G+ RL +G KV+V+E
Sbjct: 373 RVVTDGIDRLTEGAKVEVVE 392