Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., multidrug efflux RND transporter subunit MdtA from Escherichia coli ECRC62

 Score =  103 bits (256), Expect = 1e-26
 Identities = 85/325 (26%), Positives = 144/325 (44%), Gaps = 40/325 (12%)

Query: 64  AAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDS---- 119
           AA    +  RV G++   H +EG +VK GD+LAEI+P+ +++A+  AQ + +   +    
Sbjct: 84  AANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKATLAN 143

Query: 120 ---QYRRSQPLVEKGLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMD 169
                 R Q L +  L+++ + D       E     +   A +  A+L+L ++++ AP+D
Sbjct: 144 ARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITAPVD 203

Query: 170 GIISRVSAEQFESVQVGQQ--IVNIHNIDSVEVLIQLPDRLYATQPTASELAK---IETV 224
           G +     +    +  G    IV I     ++++  LP+   AT   A +  K   +E  
Sbjct: 204 GRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVVEAW 263

Query: 225 VRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNP 284
            R  S ++    +     + D  TGT  V       +  L             Q V    
Sbjct: 264 DRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFNNQDDALF----------PNQFVNARM 313

Query: 285 L-----NTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEG 339
           L     N + IP  A+      ++     +VW+LN++N VSK  V         V +  G
Sbjct: 314 LVDTEQNAVVIPTAAL------QMGNEGHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAG 367

Query: 340 INAGDRLVVAGVARLRDGMKVQVLE 364
           I+AGDR+V  G+ RL +G KV+V+E
Sbjct: 368 ISAGDRVVTDGIDRLTEGAKVEVVE 392