Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 91/377 (24%), Positives = 167/377 (44%), Gaps = 38/377 (10%)

Query: 11  MKIIRYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGE-------KVSDKLFFPAVAN 63
           MKI+    +    LL+  C   +    ++ PR K  +           +   L+   VA+
Sbjct: 1   MKILHAPHYFTITLLVFACMLYSSCSTESKPREKKIREKSLPVMQVTSIDTALYREYVAD 60

Query: 64  --AAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFS------ 115
             A +   L  RV G + +  + EG  VK+G +L +    +Y+ A+  A A  +      
Sbjct: 61  IKAIQNVELRSRVPGFLEEILIDEGKYVKKGQLLFKTNDEEYKAALAKASANLTSAIAEA 120

Query: 116 -VIDSQYRRSQPLVEKGLLAKSQFDEIAAQRQIARAELELAK-------LRLSFTQLRAP 167
             ++ +  R + +V K ++++S+     A+     A++E AK        +L +T+++AP
Sbjct: 121 KALEYEVDRLRIMVNKNVISESELKVALAKHNAVLAKIEEAKSAYAHADTQLGYTEIKAP 180

Query: 168 MDGIISRVSAEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETV-VR 226
             GII R+       +  G  +  + +I +V V   + +R Y       E +  + V + 
Sbjct: 181 FSGIIDRIPHRIGSLLDQGSLLTKVSDISAVHVYFNVSEREYLEYVNTQEDSNNDIVKLI 240

Query: 227 VPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPL- 285
           +  G  YP   K  T E +    T ++      P Q+ IL     +  A G+ V  N + 
Sbjct: 241 LADGTPYPYEGKIETMEGEFNANTGSIAFRARFPNQKQIL-----KHGATGKVVLTNQVH 295

Query: 286 NTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSE-GINAGD 344
           + + +P +A+F        +   YV++L+ +N V K +  + K   SH  V E GI  GD
Sbjct: 296 DVLMVPQKAVFEI------QDRHYVFVLDENNQV-KMKSFIPKVRFSHYYVVESGIEEGD 348

Query: 345 RLVVAGVARLRDGMKVQ 361
           ++V  G+  L++GM +Q
Sbjct: 349 KIVYEGIQDLQEGMTIQ 365