Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Toluene efflux pump periplasmic linker protein TtgD precursor from Alteromonas macleodii MIT1002

 Score =  133 bits (335), Expect = 7e-36
 Identities = 97/359 (27%), Positives = 171/359 (47%), Gaps = 25/359 (6%)

Query: 26  IAGCSE----PTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKF 81
           ++ C E    P  +    +   KV  + E ++    FP    AAE S+LSFR+ G++ + 
Sbjct: 25  LSACEEAPTPPKAVSSTPVTLYKVQHSDETIAK---FPGQVEAAEYSNLSFRIGGKLQEL 81

Query: 82  HVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDEI 141
            VK G  VK+  ++A ++  D +  +  AQ++F V  + + R +  VEKG +++S FDE 
Sbjct: 82  KVKAGEEVKENQLIARLDDRDAKAQLATAQSQFDVSSAMFERMEASVEKGAVSRSTFDEA 141

Query: 142 AAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVEVL 201
            A    A+A L  A+ +LS+T+LRAP  G+I+ V  E ++ +   Q I  +H   +++V 
Sbjct: 142 KANFLAAKASLTNAQDQLSYTELRAPFAGLIASVPVENYQVIVPQQTIAELHMPGAIDVT 201

Query: 202 IQLP-------DRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTFTVT 254
            QLP       DR  A +   SE+A + +   +P  + Y A  K+  +       ++ VT
Sbjct: 202 FQLPEQKMRMIDRSRARENRTSEMAWV-SFSGMPDKR-YAAMYKDHESTTRQGELSYEVT 259

Query: 255 LSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQYVWLLN 314
           ++LP P+   +L GM+  V      +  +      +P  A+     D  D     VW   
Sbjct: 260 ITLPEPDDINVLAGMSATVLLDMSKLIESNAKLWLVPFGAVVT---DNADPDKAIVWRFK 316

Query: 315 NDN------TVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLEERG 367
           + +      TV   +V + +   + + V   +N  D++V AG   +++G  V    + G
Sbjct: 317 SSDSDATKGTVEAVEVMITRGISNGLLVEGPLNDDDKIVAAGAHLVKEGQAVTEWTKEG 375