Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  140 bits (353), Expect = 6e-38
 Identities = 108/360 (30%), Positives = 177/360 (49%), Gaps = 34/360 (9%)

Query: 23  LLLIAGCSEPTKLER-DTLPRVKVAQAGEKVSD-KLFFPAVANAAERSHLSFRVAGEISK 80
           L L+A CSE  K E  D +  VKVA+ G      KL +     A    +L F V+G+I++
Sbjct: 22  LSLLASCSEEKKAEAPDVVRPVKVAEIGAPDEGRKLIYSGAVKARTEMNLGFHVSGKITE 81

Query: 81  FHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFS-------VIDSQYRRSQPLVEKGLL 133
             V  G  V  G +LA ++P DY+LAV  A+A  S       + D  YRR+Q L  +   
Sbjct: 82  RLVNVGDHVSPGAVLARLDPVDYKLAVTRAEADLSSARKQVEITDLAYRRAQTLAAQNAT 141

Query: 134 AKSQF-------DEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVG 186
           ++S         D+  + RQ A + LE A+ +++++ L++   GI++ VSA+  + V  G
Sbjct: 142 SQSALEQASLSRDQAVSSRQSAESALEQARNQVAYSDLKSDQKGIVTTVSADVGQVVSAG 201

Query: 187 QQIVNIHNIDSVEVLIQLPDR-LYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPD 245
             +V +      EV I +P+  +   QP     A       +    V   +++E     D
Sbjct: 202 TPVVTVAVDGEKEVQIAVPEMDVSHFQPGKQVSASFWAANTI----VLTGKVREVAQSAD 257

Query: 246 PATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDK 305
           P + TF+V +SL  PE + +L GM   + AK      N +   S+P+ A+   DG ++  
Sbjct: 258 PQSRTFSVRVSL--PEDQRVLLGMTATIEAKAD----NAVPAFSVPLAALGEKDGKKV-- 309

Query: 306 TAQYVWLLNND-NTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLE 364
               VW+++    TVS R V +   S    ++S+G++ G  +V AG   +R+ MKV++ E
Sbjct: 310 ----VWVVDRQKGTVSSRPVEVVDFSDDGARISKGLSTGVLVVSAGTQFMREDMKVRLPE 365