Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  108 bits (270), Expect = 2e-28
 Identities = 101/371 (27%), Positives = 167/371 (45%), Gaps = 42/371 (11%)

Query: 11  MKIIRYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDK-LFFPAVANAAERSH 69
           MK I   A L  +  +A CS         L  V V  A +K  D+         A  ++ 
Sbjct: 1   MKTILIAAALGGIFALASCSSEEPPAEKPLRTVDVVAAEKKPVDRGSVITGEVRARVQTD 60

Query: 70  LSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQ-------YR 122
           LSFRV+G+I +  V  GARVK G +LA I+P + +  +D A A     ++Q       + 
Sbjct: 61  LSFRVSGKIIERLVDVGARVKTGQLLARIDPEEQKADIDVALANLQSAEAQQTQAQLTFD 120

Query: 123 RSQPLVEKGLLAKSQFDE-----IAAQRQI--ARAELELAKLRLSFTQLRAPMDGIISRV 175
           R Q L +  + ++S  D+     +  Q  +  A+A+L+ A+  LS+T+LRA  DG+I+  
Sbjct: 121 RQQNLFKTQVTSRSAVDKAQETLLTTQGAVRSAQAQLDTARDALSYTELRADADGVITAR 180

Query: 176 SAEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRV----PSGQ 231
           + E  +  Q  Q +  + +    + +  + + L+  +        I+ +V V       Q
Sbjct: 181 NVEVGQVAQAAQLVFTLAHDGPRDAVFDVYESLFLER-------DIDNLVNVSLLSDPAQ 233

Query: 232 VYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAK-GQHVGLNPLNTISI 290
           +  A ++E +   DP  GT  V + L           M + + A    H     ++ I +
Sbjct: 234 IVAAPVREISPTIDPDNGTIRVKVGLN--------GDMTMPLGAPVSGHFRFRQIDAIEL 285

Query: 291 PIEAIFNADGDELDKTAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVA 349
           P  A+ + DG      A  VWL++   + V+ R V++A        V+EG+N GD +V  
Sbjct: 286 PWSAMASQDG------APAVWLVDPRSSEVAMRPVQVADYETGQFVVTEGLNPGDLVVTV 339

Query: 350 GVARLRDGMKV 360
           G   LR G KV
Sbjct: 340 GTKFLRAGEKV 350