Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., Multidrug export protein AcrF from Xanthobacter sp. DMC5

 Score =  558 bits (1437), Expect = e-163
 Identities = 328/1015 (32%), Positives = 540/1015 (53%), Gaps = 16/1015 (1%)

Query: 27   INNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTYPL 86
            + +R + W   L F++ G  ++  LGR EDPAFTIK  ++   +PGA+ Q++  +VT  +
Sbjct: 11   LEHRSLVWYFMLAFVLAGFMSYLQLGREEDPAFTIKTMVIQAQWPGASAQEMTRQVTDRI 70

Query: 87   EKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGVN 146
            EK +++L  +D   S++  G + I V +++     D+   W ++R  VND++G  P GV 
Sbjct: 71   EKKLEELEALDYTRSLTVPGQTTIFVNLRDTTKARDVVPTWLQVRNMVNDIRGTFPQGVT 130

Query: 147  PPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQEQVFI 206
             P   D FGDVYG + A T +G + ++L D V+ +R ++  +  V +V + G Q E +F+
Sbjct: 131  GPQFNDRFGDVYGNIYAFTSDGLTQRQLRDRVEEVRAQVLTVPNVGRVDIIGAQDEVIFL 190

Query: 207  EISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLGDLILS 266
            E S ++++ L I  + V + L  QN +  +G ++ G E I +   G F   E L  + L 
Sbjct: 191  EFSTRKMAALDIDQRAVLSSLQAQNALVPSGVLQAGPERIAVRVNGRFSSEESLKAINLR 250

Query: 267  ERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRFDRRLA 326
              G      L D+A ++RGYV+ P ++  FNG+ A+ + +    G N+++ G+     + 
Sbjct: 251  INGR--FFPLTDIATIRRGYVDPPQSLFRFNGEPAIGLAIGMKAGANLLQFGEALKAEMT 308

Query: 327  ELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLLIGLIL 386
             ++   P+G+ +  V  QP+ V+++V GF  +L +AV IV+ +    +GLR+GL++ + +
Sbjct: 309  RIEADLPVGVGVHLVSDQPQIVEEAVGGFTRALMEAVIIVLAISFVSLGLRAGLVVAISI 368

Query: 387  LLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRLQAATD 446
             L +  TF+ M Y  I LQRISLGAL+IALG+LVD+A++ VE ++   + G T  +AAT 
Sbjct: 369  PLVLAITFMVMAYTGISLQRISLGALIIALGLLVDDAMIAVEMMVARLEAGDTLRKAATY 428

Query: 447  IVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISLTPFFA 506
            + T T +P+L  T++ V  F PIGL+    GE+  TLF V+ +SL++SW  A+  TP   
Sbjct: 429  VYTSTAFPMLSGTLVTVAGFIPIGLNNSNAGEFTFTLFVVIAVSLLVSWLVAVLFTPLLG 488

Query: 507  DLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYGFTKVK 566
                     P S        G     +   L+  M   W T+GV VL    SL G   V+
Sbjct: 489  VAIL-----PKSLPHHKEGGGRFARAFAWILKRAMLWRWTTIGVTVLVFILSLAGMGLVQ 543

Query: 567  QAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELE-KWLSAQESVDSVTTTAGKGLQRFM 625
            Q FFPSS     +VD  +P+   I  T+A +   E + L     +D  +T  G G  RF+
Sbjct: 544  QQFFPSSDRRELIVDWNLPQNASIAETNAQMARFEQEVLKGNPDIDHWSTYVGTGAPRFV 603

Query: 626  LTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPGGGAKI 685
            L    + +  A+G+        ++   L  +F+A+LD   P  +  +  +++GP  G  +
Sbjct: 604  LPVDVQPADVAFGQTIIVTKGLEERNRLKGQFQAYLDKAMPGTDAFVHFLDIGPPVGRPV 663

Query: 686  EARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYGITKA 745
            + R+ G D   +R+ A     VM  +P   N+  DW E  +V++    + +AR+ G+T  
Sbjct: 664  QYRVSGPDIQQVRTYALDFASVMRGNPHLGNVVFDWMEPARVIKVDVLQDKARQLGVTSE 723

Query: 746  DVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYIPLQQ 805
            D+   L     G  I   RD   L+ ++ R   +ER  I  +  +++        +PL  
Sbjct: 724  DIAGALNGVLDGTAITQVRDDIYLVTVLGRANAQERQSIETLRDLQLPGSG-GRSVPLAA 782

Query: 806  V-TLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAI--PLPPGY 862
            V TL YE+  E P I R  R R+ T+ A   ++      T+ ++L P + A    LPPGY
Sbjct: 783  VATLRYEI--EQPTIWR--RSRLPTITAKAGIIDTAQPNTVVEQLTPAVAAFNAKLPPGY 838

Query: 863  FLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTG 922
             +  GG  E S  ++A +   MPL    M  I +    S +  ++V+   PLA+IGV   
Sbjct: 839  RVVIGGAVEESQKSQAPILAVMPLMLFIMATILMIQLQSFQRLVLVFAVAPLALIGVVAA 898

Query: 923  LLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVC 982
            L+    P GF+A+LG L+L G+L++N ++L+ QIE     G+ P+ AV +A+  R+RP+ 
Sbjct: 899  LVPSGAPLGFVAILGVLALIGILIRNSVILIVQIEQLRAEGRPPWDAVREATEHRMRPIM 958

Query: 983  MAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVKVPQ 1037
            + A    LG+IP+  ++F+ PMA  +M G+   TVLTL+ +P LY  +  +  P+
Sbjct: 959  LTAAAASLGLIPIAREVFWGPMAYAMMGGIIVGTVLTLLFLPALYVAWFRIPAPK 1013