Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1045 a.a., cation transporter from Pseudomonas simiae WCS417

 Score =  279 bits (713), Expect = 9e-79
 Identities = 252/1049 (24%), Positives = 474/1049 (45%), Gaps = 61/1049 (5%)

Query: 25   YFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTY 84
            + I  R+I  +  L+    G A++  L     P  T     + ++  G +P + E+ +T+
Sbjct: 8    FAIEQRIIVLLAVLLMAGVGIASYQKLPIDAVPDITNVQVQINSAAAGFSPLETEQRITF 67

Query: 85   PLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPG 144
            P+E A+  L  + +  S+S  GLSQ+TV  K+     DL      +  ++   +  LP G
Sbjct: 68   PIETAMAGLPGLQQTRSLSRSGLSQVTVIFKDG---TDLFFARQLVNERLQVAREQLPLG 124

Query: 145  VNPPL--VIDDFGDVYGILLAVT-------GEGYSYKELLDYVDYL-RRELELIDGVSKV 194
            +   +  +    G+++   +          G  Y+  +L    D++ + +L  + GV+++
Sbjct: 125  IETAMGPISTGLGEIFLWTVEAKEGARKDDGTPYTPTDLRVIQDWIIKPQLRNVPGVAEI 184

Query: 195  SVSGQQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEF 254
            +  G   ++  I    KR++   ++   +   L   N    AG I    E + I   G+ 
Sbjct: 185  NTIGGFAKEYQIAPDPKRLAAYNLTLNDLVTALERNNANVGAGYIERSGEQLLIRAPGQL 244

Query: 255  DDVEKLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNV 314
              +E + +++++       I +R+VA+V+ G  E+ +   T NG+  +   V    G N 
Sbjct: 245  ASIEDIANIVITSSDGTP-IRVRNVAQVEIGR-ELRTGAATENGREVVLGTVFMLIGENS 302

Query: 315  VEVGQRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFM 374
              V Q   ++L  +    P G+    VY +   V+K++S    +L +   +V+ VL  F+
Sbjct: 303  RSVSQAVAKKLEAINRSLPEGVVAVTVYDRTNLVEKAISTVKKNLFEGALLVVAVLFLFL 362

Query: 375  G-LRSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGIL-- 431
            G +R+ L+  +++ L +L TF  M   K+    +SLGAL    G++VD A+V+VE  +  
Sbjct: 363  GNIRAALITAMVIPLAMLFTFTGMFTNKVSANLMSLGAL--DFGIIVDGAVVIVENAIRR 420

Query: 432  ---IGTQKGRT-----RLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTL 483
                  + GR      RL        + +  L+   +I +  + PI       G+    +
Sbjct: 421  LAHAQHRHGRLLTRSERLHEVFAAAKEARRALIFGQLIIMVVYLPIFALTGVAGKMFHPM 480

Query: 484  FTVLLISLMLSWFTAISLTPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRR 543
               ++I+L+ +   +++  P    LF  G+      EE +        VY   L++ M R
Sbjct: 481  AFTVVIALLGAMILSVTFVPAAIALFVTGKVK----EEENLVMRSARRVYAPVLDWVMAR 536

Query: 544  AWLTMGVLVLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKW 603
                 G+ VL + AS    +++   F PS +   F        GT +  +  +  +LEK 
Sbjct: 537  RPWVFGLAVLTIVASGVVASRMGSEFIPSLSEGDFAQQALRVPGTSLTQSVQMQQQLEKT 596

Query: 604  LSAQ----ESVDSVTTTAG-------KGLQRFMLTYSPEKSYAAYGEIT-TRVTDYQQLA 651
            L AQ    E V + T TA          +    +   P+  +    +   T + D Q+ +
Sbjct: 597  LMAQVPEIERVFARTGTAEIASDPMPPNISDSYVMLKPKDQWPDPRKSRETLIADIQRAS 656

Query: 652  ALMARFRAHLDARYPQINYKLKQIELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYAD 711
            A++      L         +L+  EL  G  + +  ++ G D  VL   A ++ + +   
Sbjct: 657  AIVPGSAYELSQPI-----QLRFNELISGVRSDVAVKVFGDDMDVLNKTAGEIAETLQKL 711

Query: 712  PGAYNIRHDWRERTKVLEPQFNESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMP 771
             GA  ++ +      VL    +  +A R+G+   DV + LA++  G+  G   +G     
Sbjct: 712  GGASEVKVEQTSGLPVLTINIDRDKAARFGLNVGDVQDTLAVAVGGRQAGTLYEGDRRFD 771

Query: 772  IVARLPEEERVDIRNIEGMKIWSPALSE----YIPLQQVTLGYEMRWEDPLIVRKNRKRM 827
            +V RL +  R DI  +  + I  P  +     +I L QV    ++      I R+N KR+
Sbjct: 772  MVVRLSDALRTDIDGLSRLLIPVPGNASGQLGFIALSQVA-SLDLVLGPNQISRENGKRL 830

Query: 828  LTVMADPDLLGEETAATLQQRLQPQIEAIPLPPGYFLEWGGEYESSGDAKASLFKTMPLG 887
            + V A+  + G +  + +++     +  + +P GY+  WGG++E   +A   L   +P+ 
Sbjct: 831  VIVSAN--VRGRDIGSFVEEAEAAILAQVKVPAGYWTTWGGQFEQLKEASERLRIVVPVA 888

Query: 888  YLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLK 947
             L +F +   +FN++K+ L+V+  +P A+ G    L   + P    A +GF++LSG+ + 
Sbjct: 889  LLLVFGLLFMMFNNLKDGLLVFTGIPFALTGGIMALWLRDIPLSISAGVGFIALSGVAVL 948

Query: 948  NGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMIPLLPDI-----FFR 1002
            NG+V++  I      G+   +A+ + +L+R+RPV M A+   LG IP+           R
Sbjct: 949  NGLVMIAFIRNLREEGRSLSMAINEGALTRLRPVLMTALVASLGFIPMALATGTGAEVQR 1008

Query: 1003 PMAVTIMFGLGFATVLTLIVVPVLYRLFH 1031
            P+A  ++ G+  +T+LTL+V+P LY+  H
Sbjct: 1009 PLATVVIGGIISSTLLTLLVLPALYQWAH 1037



 Score = 37.0 bits (84), Expect = 7e-06
 Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 27/252 (10%)

Query: 805  QVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAI--PLPPGY 862
            QV +G E+R        +N + +  V+    +L  E + ++ Q +  ++EAI   LP G 
Sbjct: 270  QVEIGRELRTG---AATENGREV--VLGTVFMLIGENSRSVSQAVAKKLEAINRSLPEGV 324

Query: 863  FLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLF-NSVKESLIVWLTVPLAVIGVTT 921
                  +  +  +   S  K        + +  +FLF  +++ +LI  + +PLA++   T
Sbjct: 325  VAVTVYDRTNLVEKAISTVKKNLFEGALLVVAVLFLFLGNIRAALITAMVIPLAMLFTFT 384

Query: 922  GLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPV 981
            G+         M+L G L   G+++   +V+++     +   +  +  ++  S  R+  V
Sbjct: 385  GMFTNKVSANLMSL-GALDF-GIIVDGAVVIVENAIRRLAHAQHRHGRLLTRS-ERLHEV 441

Query: 982  CMAAVTT--------ILGMIPLLPDI--------FFRPMAVTIMFGLGFATVLTLIVVPV 1025
              AA           ++ M+  LP           F PMA T++  L  A +L++  VP 
Sbjct: 442  FAAAKEARRALIFGQLIIMVVYLPIFALTGVAGKMFHPMAFTVVIALLGAMILSVTFVPA 501

Query: 1026 LYRLFHHVKVPQ 1037
               LF   KV +
Sbjct: 502  AIALFVTGKVKE 513