Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., multidrug transporter AcrB from Pseudomonas simiae WCS417

 Score =  576 bits (1485), Expect = e-168
 Identities = 326/1019 (31%), Positives = 565/1019 (55%), Gaps = 12/1019 (1%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            ++ + + NR I   + ++  + GT ++  LG+ EDP FT K  ++ T++PGAT Q+V  +
Sbjct: 5    LSEWALRNRQIVLFLMILLAVVGTLSYSKLGQSEDPPFTFKAMVIKTNWPGATAQEVSRQ 64

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            VT  +EK + +    + + S S  G SQ+T   +++     +P++W ++R+K++D++  L
Sbjct: 65   VTERIEKKLMETGEYERIVSFSRPGESQVTFIARDSMHSAQIPELWYQVRKKISDIRQTL 124

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            PP +  P   D+FG  +G + A+TG+G+ Y  L DY D ++ +L+ +  V KV + G Q 
Sbjct: 125  PPDIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVADVGKVELLGLQD 184

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            E+++IE+S  +++TLG+    V   L  QN VS AG     SE +++  +G F  VE++ 
Sbjct: 185  EKIWIELSNLKLATLGLPLAAVQQALQEQNAVSTAGFFETPSERVQLRVSGNFKTVEEIR 244

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
            +  +  R       + DVA++ RG+ + P+  + + G  A+ + V+   G +++ +G+  
Sbjct: 245  NFPI--RVGDRTFRIGDVADIHRGFNDPPAPRMRYMGADAIGLAVAMRDGGDILVLGKAL 302

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
            +   A L+   P G+++ +V  QP  V  SV  FV  L +A+AIV++V  F +G+R+G++
Sbjct: 303  EGEFARLQKNLPAGMELRKVSDQPAAVKTSVGEFVQVLAEALAIVLLVSFFSLGVRTGMV 362

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            + L + L +  TF  M Y  I L +ISLGALV+ALG+LVD+AI+ VE + I  ++G  RL
Sbjct: 363  VALAIPLVLAMTFATMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYDRL 422

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
            +AA+   T T +P+L  T+I    F PI  ++ +TGEY  ++F V+ I+L+ SW  A+  
Sbjct: 423  KAASFAWTSTAFPMLTGTLITAAGFLPIATAQSSTGEYTRSIFQVVTIALLASWVAAVVF 482

Query: 502  TPFFADLFF----RGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAA 557
             P+  +       +   A    +  DPY    +   RR +E+C+RR    + + +L    
Sbjct: 483  VPYLGEKLLPDLAKIHAAKHGTDGPDPYGTPFYQRVRRMVEWCVRRRKTVIVLTLLLFIG 542

Query: 558  SLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTA 617
            S+  F  V Q FFP+S     MVD+ + EG  +  T   +  LE  L     +D+     
Sbjct: 543  SVALFRFVPQQFFPASGRLELMVDLKLAEGASLSNTADQVKRLEALLKEHAGIDNYVAYV 602

Query: 618  GKGLQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIEL 677
            G G  RF L    +   A++ +        ++  +L       L+ ++P +  ++ ++E 
Sbjct: 603  GTGSPRFYLPLDQQLPAASFAQFVVLAKTIEERESLRTWLIQTLNEQFPDLRSRVTRLEN 662

Query: 678  GPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQA 737
            GP  G  ++ R+ G     +R++A +V   +  +P   N+  DW E +K++    ++ +A
Sbjct: 663  GPPVGYPVQFRVTGEHIEEVRALARKVAVKVRENPHVANVHLDWEEPSKIVYLNIDQDRA 722

Query: 738  RRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPAL 797
            R  G++ A++ +FL  S +G ++  YR+   L+ I+ R    ER ++  +  + + +   
Sbjct: 723  RALGVSTANLSKFLQSSLTGSSVSQYREDNELIEILLRGTVHERTELSLLPSLAVPTDNG 782

Query: 798  SEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAI- 856
                  Q  TL Y   +E+ +I  +NR   +T+ A  D+ G+E  ATL Q++ P +E + 
Sbjct: 783  KSVALSQIATLEY--GFEEGIIWHRNRLPTVTIRA--DIYGKEQPATLVQQILPTLEGVR 838

Query: 857  -PLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLA 915
              LP GY L+ GG  E S   + S+   +PL  + +  + +    S   + +V+LT PL 
Sbjct: 839  AELPDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQLRSFSRTAMVFLTAPLG 898

Query: 916  VIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASL 975
            +IGVT  LL    PFGF+A+LG ++LSGM+++N ++L+DQIE ++ +G  P+ A+++A++
Sbjct: 899  LIGVTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIKAGLAPWQAIIEATV 958

Query: 976  SRVRPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVK 1034
             R RP+ + A+  +L MIPL   +FF PMAV IM GL  AT LTL+ +P LY  +  VK
Sbjct: 959  RRFRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVK 1017