Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1082 a.a., Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA from Variovorax sp. SCN45

 Score =  288 bits (736), Expect = 2e-81
 Identities = 267/1064 (25%), Positives = 478/1064 (44%), Gaps = 89/1064 (8%)

Query: 34   WMVSLIFLIGGTAAFFNLGRLED---PAFTIKDAMVVTSYPGATPQQVEEEVTYPLEKAI 90
            W++ L  +       +N  +L     P  T     + T  PG +P + E+ VT+P+E  +
Sbjct: 14   WLILLAVVAMAGLGVYNYQKLPIDAVPDITNVQVQINTGAPGYSPLETEQRVTFPIETVM 73

Query: 91   QQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGVNPPL- 149
              L  + +  S+S  GLSQ+TV  K+        Q+ +E   ++    G +P GV+P + 
Sbjct: 74   AGLPGLLQTRSLSRYGLSQVTVIFKDGTDVYFARQLVNE---RLQSASGEMPEGVHPQVG 130

Query: 150  -VIDDFGDVYGILLAVT-------GEGYSYKELLDYVDYL-RRELELIDGVSKVSVSGQQ 200
             +    G++Y   +          G  Y+  +L +  D++ + +L  + GV++++  G  
Sbjct: 131  PISTGLGEIYLWTVEAKDGAKKPDGTPYTSTDLREIQDWIIKPQLRNVAGVTEINSIGGY 190

Query: 201  QEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKL 260
            ++Q  I    +++S  G+S   V   L   N    AG I    E   I   G+   VE L
Sbjct: 191  EKQYQIAPIPEKLSAYGLSMADVVKALERNNTNVGAGYIERRGEQYLIRAPGQARGVEDL 250

Query: 261  GDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQR 320
             ++ILS  G+   + +RDVAEV  G  E+ +   T NG+  +   V    G N   V Q 
Sbjct: 251  RNIILSSNGSTP-VRVRDVAEVGIGK-ELRTGAATDNGREVVLGTVFMLIGENSRIVSQA 308

Query: 321  FDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMG-LRSG 379
              +++A++    P G++   VY +   VDK+++    +L +   +VI+VL  F+G +R+ 
Sbjct: 309  VAKKMADINRTLPEGVEAITVYDRTVLVDKAIATVKKNLLEGAVLVIVVLFLFLGNMRAA 368

Query: 380  LLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGIL-----IGT 434
            ++  +++ L++L TF  M   K+    +SLGAL    G+++D A+V+VE  +        
Sbjct: 369  VITAMVIPLSMLFTFTGMVNQKVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQH 426

Query: 435  QKGR--TRLQAATDIVT---QTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLI 489
            + GR  TR +   ++     + +  LL   +I +  + PI       G+    +   ++I
Sbjct: 427  RHGRPLTRKERFHEVFAASQEARRALLFGQLIIMIVYLPIFALTGVEGKMFHPMALTVVI 486

Query: 490  SLMLSWFTAISLTPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMG 549
            +L+ +   +++  P    LF  G+K     E+ +   G+    Y   L   +    + + 
Sbjct: 487  ALLGAMILSVTFIPAAVALFI-GKKV---SEKENRLMGWAKKAYEPLLVRVLEAKAVVL- 541

Query: 550  VLVLGLAASLYGF--TKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQ 607
              V G+A  L G   T++   F P+     F V      GT +  +  +  +LE+ L  +
Sbjct: 542  -TVAGIAVVLAGLLATRLGSEFIPNLNEGDFAVQALRIPGTSLSQSVQMQQQLERTLKEK 600

Query: 608  -ESVDSVTTTAGKGLQRFMLTYSPEKSYAAYGEITT-------RVTDYQQLAALMARFRA 659
               +D +   A  G         P     AY  +         R T  + + A+      
Sbjct: 601  FPEIDRIF--ARTGTAEIASDPMPPNISDAYVMLKPVDQWPEPRRTRQEVVQAVQKEV-- 656

Query: 660  HLDARYPQINYKLKQI------ELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPG 713
               ++ P  NY+  Q       EL  G  A +  ++ G D  VL   A ++  V+ +  G
Sbjct: 657  ---SKIPGNNYEFSQPIQLRFNELVSGVRADVAVKVFGDDMDVLNKTAREIEGVLKSISG 713

Query: 714  AYNIRHDWRERTKVLEPQFNESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIV 773
            A  +  +      +L    +  +A RYG+  ADV + +A +  G+  G   +G     IV
Sbjct: 714  AAEVNVEQTTGLPMLTVNIDRDKATRYGLNIADVQDTIATAIGGRNAGTLFEGDRRFDIV 773

Query: 774  ARLPEEERVDIRNIEGMKIWSPALS---------------------EYIPLQQVTLGYEM 812
             RLP+  R D+  I+ + I  PA S                      +IPL +V    E+
Sbjct: 774  VRLPDNVRGDLEAIKRLPIALPASSAAADVVGATSVAGAGANAARVNFIPLGEVAT-LEL 832

Query: 813  RWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAIPLPPGYFLEWGGEYES 872
                  + R++ KR + V A+  + G +  + + +        + +P GY+  WGG++E+
Sbjct: 833  APGPNQVSREDGKRRIVVSAN--VRGRDLGSFVSEAAGALDSQVKVPTGYWTTWGGQFEN 890

Query: 873  SGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGF 932
               A   L   +P+  L +F +   +F ++K+ LIV+  +P A+ G    L   + P   
Sbjct: 891  LQSATKRLQIVVPVALLLVFTLLFAMFGNMKDGLIVFTGIPFALTGGILALWLRDIPLSI 950

Query: 933  MALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGM 992
             A +GF++LSG+ + NG+V++  I      G     A+ + +L+R+RPV M A+   LG 
Sbjct: 951  TAAVGFIALSGVAVLNGLVMISFIRNLREGGASLDHAIHEGALTRLRPVLMTALVASLGF 1010

Query: 993  IPLLPDI-----FFRPMAVTIMFGLGFATVLTLIVVPVLYRLFH 1031
            +P+           +P+A  ++ G+  +T LTL+V+PVLYRL H
Sbjct: 1011 VPMAIATGTGAEVQQPLATVVIGGILSSTALTLLVLPVLYRLAH 1054



 Score = 38.5 bits (88), Expect = 3e-06
 Identities = 35/177 (19%), Positives = 82/177 (46%), Gaps = 17/177 (9%)

Query: 876  AKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMAL 935
            A A++ K +  G + + ++      +++ ++I  + +PL+++   TG++        M+ 
Sbjct: 339  AIATVKKNLLEGAVLVIVVLFLFLGNMRAAVITAMVIPLSMLFTFTGMVNQKVSANLMS- 397

Query: 936  LGFLSLSGMLLKNGIVLLD----QIEIEMH------SGKDPYLAVVDASLSRVRPVCMAA 985
            LG L   G+++   +V+++    ++    H      + K+ +  V  AS    R +    
Sbjct: 398  LGALDF-GIIIDGAVVIVENCVRRLAHAQHRHGRPLTRKERFHEVFAASQEARRALLFGQ 456

Query: 986  VTTILGMIPL-----LPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVKVPQ 1037
            +  ++  +P+     +    F PMA+T++  L  A +L++  +P    LF   KV +
Sbjct: 457  LIIMIVYLPIFALTGVEGKMFHPMALTVVIALLGAMILSVTFIPAAVALFIGKKVSE 513