Pairwise Alignments
Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1041 a.a., CzcABC family efflux RND transporter, transmembrane protein from Variovorax sp. SCN45
Score = 269 bits (687), Expect = 9e-76
Identities = 266/1031 (25%), Positives = 459/1031 (44%), Gaps = 67/1031 (6%)
Query: 35 MVSLIFLIG-GTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTYPLEKAIQQL 93
+V L+G G AF N+ P T + T PG + VE+ +T P+E A+ L
Sbjct: 17 LVFFAVLVGLGVQAFRNVPVDAFPDVTPVQVNIYTESPGLAAEDVEKLLTTPIEGAMAGL 76
Query: 94 TYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGVNPPLV--- 150
V+EV S+S GLS + V K++ D+ + K+ + KG LP G P++
Sbjct: 77 PGVEEVRSVSLFGLSYVGVYFKDDV---DIYFARRLVGEKLQEAKGRLPQGYGEPVLGPN 133
Query: 151 IDDFGDVYGILLAVTGEGYSYKELLDYVDY-LRRELELIDGVSKVSVSGQQQEQVFIEIS 209
G V+ + + S +L D+ +R L GV + G +Q+Q ++I
Sbjct: 134 SSGLGQVFWYTVESEDKKMSTMDLRTLHDWTVRLILRTAPGVDDIVSWGGEQKQFQVQID 193
Query: 210 MKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLGDLILSERG 269
+++ +S + V L+ N +I +G+E + G + + ++++ER
Sbjct: 194 PRKLIQYSVSFKEVMERLTANNKQVGGQSINLGAEQFLVRGLGLVGTTKDIEQIVIAERN 253
Query: 270 AQGLIYLRDVAEVKRGYVEVPS---NVITFNGKLALNVGVSFAQ-GVNVVEVGQRFDRRL 325
+Y+R+VA+VK E P+ +T +GK A+ +G++ A+ N V +L
Sbjct: 254 GAP-VYVRNVAQVK----EAPAPRFGAVTRDGKEAV-LGIALARVNENAKNVVDAVKAKL 307
Query: 326 AELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMG-LRSGLLIGL 384
A + P G+ + VY + + V K+++ SL + +V ++L F+G RS +++ +
Sbjct: 308 AVAQAALPKGVTLQPVYDRTELVKKALNTAESSLVEGAILVAVILFLFLGEFRSAIVVVI 367
Query: 385 ILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILI----------GT 434
L + +L FI MQ F + +SL L I GM+VD A+V+VE
Sbjct: 368 TLPMAMLIAFILMQQFGVSANLMSLAGLAIGTGMMVDGAVVMVENAFRLLAHAKESGKPI 427
Query: 435 QKGRTRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLS 494
QK L+AA ++V + +L V+ + F+ GL T+ + SL+LS
Sbjct: 428 QKTHLILEAAREVVNPIAFAILIIIVVFLPLFSLTGLEGKLFKPMAYTITFAMAGSLLLS 487
Query: 495 WFTAISLTPFFADLFFRGQKAPASGEESDPYQ-GFIFVVYRRFLEFCMRRAWLTMGVLVL 553
++L P A + + + EE D + +Y L++ + R L +G ++
Sbjct: 488 ----LTLVPVLAAMILKPK------EEKDTFLVRRAKRIYLPLLDWALERKRLVVGSAIV 537
Query: 554 GLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQ-ESVDS 612
L ASL F + + F P V T + + + E+ L Q V S
Sbjct: 538 LLLASLALFPFLGKEFMPQLQEGTIQFRVTGIPSTSLDESIRVSNEVSAALRKQFPQVRS 597
Query: 613 VTTTAGK--GLQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINY 670
V T G+ G + + Y E Y +LA+ M + L+ P + +
Sbjct: 598 VLATIGRAEGGETTDVNYMELNLDTKPAEEWPEKISYGKLASDM---QEALEKVVPTVVF 654
Query: 671 KLKQI------ELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRER 724
Q EL G A + ++ G D L + ++ V+ PG ++ + +
Sbjct: 655 GATQPIQSRVEELISGVRATLALKLYGEDLATLDRLTGKIQGVLGKIPGIADLSAEANKG 714
Query: 725 TKVLEPQFNESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDI 784
L + N A RYGI ++ E + G + DGT I RL +E RV
Sbjct: 715 KPQLIIKVNRDAAARYGINADEILEVVQSGIGGSAVSTLIDGTKRFEIAVRLSDEFRVSP 774
Query: 785 RNIEGMKIWSPALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAAT 844
I + I + +P QV E+ I R++ +R + D + G + +
Sbjct: 775 AAIASIPIRTGG-GALVPFSQVA-SIELDEGYSFIRRESLQRYSVLQMD--VKGRDVDSF 830
Query: 845 LQQ---RLQPQIEAIPLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNS 901
+++ +L+ Q+E LP GY++EWGG +E+ A A L +PL +F++ FNS
Sbjct: 831 VKEADTQLKAQVE---LPTGYWIEWGGSFENQQRAMARLGVIVPLTIGLIFILLYTAFNS 887
Query: 902 VKESLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMH 961
V+ + ++ VP A+IG GL + +GF+++ G+ + NGIV++ +
Sbjct: 888 VRHATLIIANVPFAIIGGIVGLFVSGQYLSVPSAIGFIAVFGVAMLNGIVMVTFLNDLRR 947
Query: 962 SGKDPYLAVVDASLSRVRPVCMAAVTTILGMIPLLPDIFF-----RPMAVTIMFGLGFAT 1016
G AV + R+RPV M A ILG+IP+L RP+A ++ GL +T
Sbjct: 948 QGLPIREAVQQGAALRLRPVLMTASVAILGLIPMLLSTGVGAETQRPLATVVVGGLFTST 1007
Query: 1017 VLTLIVVPVLY 1027
LTL+++P++Y
Sbjct: 1008 ALTLLILPLMY 1018