Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  566 bits (1458), Expect = e-165
 Identities = 322/1006 (32%), Positives = 552/1006 (54%), Gaps = 12/1006 (1%)

Query: 34   WMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTYPLEKAIQQL 93
            W +  + L+ G  ++FNLGR EDP+FTIK  ++ T +PGAT  +   +VT  +EK +++L
Sbjct: 19   WYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDETLYQVTDRIEKKLEEL 78

Query: 94   TYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGVNPPLVIDD 153
              +D   S +  G S + V +++     D+P IW ++R+K+ D++G  P G+  P   D+
Sbjct: 79   DSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDIRGEFPAGIQGPGFNDE 138

Query: 154  FGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQEQVFIEISMKRI 213
            FGDV+G + A T +G + ++L DYV+  R E+  +  + K+ + G Q E +++  S +++
Sbjct: 139  FGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVGTQDEVLYLNFSTRKL 198

Query: 214  STLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLGDLILSERGAQGL 273
            + LGI  + V   L  QN V+ AG I  G E I +  +G+F   + L  + L  R     
Sbjct: 199  AALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEKDLQTVNL--RINDRF 256

Query: 274  IYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRFDRRLAELKYQQP 333
              L D+A+++RGYV+ PS +  +NG+ A+ + +    G N+   G    +R+ ++    P
Sbjct: 257  FRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFGAALKKRMDQVVQDLP 316

Query: 334  IGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLLIGLILLLTVLGT 393
            +G+ +  V  Q   V ++V GF  +L +AV IV+ V    +G+R+GL++   + L +   
Sbjct: 317  VGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRAGLVVACSIPLVLAMV 376

Query: 394  FIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRLQAATDIVTQTKW 453
            F+FM+Y  I +QRISLGAL+IALG+LVD+A++ VE ++   + G ++ QAAT   T T +
Sbjct: 377  FVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGESKEQAATFAYTSTAF 436

Query: 454  PLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISLTPFFADLFFRGQ 513
            P+L  T++ V  F PIGL+  + GEY  TLF V+ ++L++SW  A+   P       +G 
Sbjct: 437  PMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVAVFFAPVLGVHILKGD 496

Query: 514  KAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYGFTKVKQAFFPSS 573
            K  A   E++P  G +   +   L +CMR  WLT+   V+  A +++    V+  FFPSS
Sbjct: 497  KLKA--HEAEP--GRVGRAFEGGLLWCMRNRWLTIIGTVVLFALAIFCMRFVQNQFFPSS 552

Query: 574  TTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGLQRFMLTYSPEKS 633
              P  +VD+ +P+   I  T  ++   E  +     +   +T  G+G  RF L    +  
Sbjct: 553  DRPEILVDLNLPQNASIEETRKVVDRFEARIKDDPDLVHWSTYIGQGAIRFYLPLDQQLQ 612

Query: 634  YAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPGGGAKIEARIVGSD 693
               Y ++      +++  A+M R +  L   +  +   ++ +E+GP  G  I+ R+ G+D
Sbjct: 613  NPYYAQLVIVSKGFEERQAMMDRLQKILHEEFVGVGTNVQSLEMGPPVGRPIQYRVSGAD 672

Query: 694  PTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYGITKADVDEFLAM 753
               +R  A ++  ++  +     + +DW E  KVL  +  + +AR+ G++  DV   +  
Sbjct: 673  IDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVEIAQDKARQLGLSSEDVANVMNS 732

Query: 754  SFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYIPLQQVTLGYEMR 813
              SG  I    D   L+ +VAR  + ER     ++ ++I +P  +    L   T+ YE+ 
Sbjct: 733  IVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQILTPNGTSIPLLSFATVRYEL- 791

Query: 814  WEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIE--AIPLPPGYFLEWGGEYE 871
             E PL+ R++RK  +T+ A  +  GE     L  +L+P+I+  A  LP G+ +  GG  E
Sbjct: 792  -EQPLVWRRDRKPTITIKASVN--GEIQPTDLVAQLKPKIDEFASKLPVGFEVATGGTVE 848

Query: 872  SSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFG 931
             S  A+  + K +PL    M    +   +SV++  +V    PL +IGV   L+   TP G
Sbjct: 849  ESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAPLGLIGVVLALVPTGTPMG 908

Query: 932  FMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILG 991
            F+A+LG L+L+G++++N ++L+ QI+     G  P+ AVV+A+  R RP+ + A    LG
Sbjct: 909  FVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEATNHRRRPILLTAAAASLG 968

Query: 992  MIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVKVPQ 1037
            MIP+  ++F+ PMA  ++ G+  AT+LTL+ +P LY  ++ ++ PQ
Sbjct: 969  MIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPALYVAWYKIREPQ 1014