Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  534 bits (1376), Expect = e-155
 Identities = 306/1016 (30%), Positives = 544/1016 (53%), Gaps = 10/1016 (0%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            ++A  +  R I+  + ++    GT AFF LGR EDP FT+K   ++T++PGAT Q++++ 
Sbjct: 8    LSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQDL 67

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            V  PLEK +Q+L + D   + +  GL+   V++++   P  + + + + R+K  D    +
Sbjct: 68   VAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAKLM 127

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            P GV  P++ D+F DV   + A+  +G   ++L+   + LR++L  + GV KV++ G+Q 
Sbjct: 128  PAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGEQA 187

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            E++F+  S  R++TLGI+PQ +F+ L  QN +S +G++      + +   G FD + K+ 
Sbjct: 188  ERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAKIR 247

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
            +  +  +G    + L DVA+V+RGY +  + ++  +G+ AL +G+   +G N +++G+  
Sbjct: 248  ETPVVAQGRP--LKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKAL 305

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
            +   A++    P+G+ +++V  Q   +  SV  F++    A+ +V++V    MG R G++
Sbjct: 306  EAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGVV 365

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            +   + LT+   F+ M     +  RI+LG+L++ALG+LVD+AI+ +E +++  ++G  R+
Sbjct: 366  VAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRI 425

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
            +A+    + T  P+L  T++    F P G ++   GEY   +F ++ I+L+ SW  A++ 
Sbjct: 426  KASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAF 485

Query: 502  TPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYG 561
            TP+         K    G  +  Y    +  +R  L + +   WL  G +V    A++ G
Sbjct: 486  TPYLGVKLLPRIKT-IEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLG 544

Query: 562  FTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGL 621
               VK+ FFP+S  P  +V++ MP GT I  T+A  +++E WL  QE    VTT  G+G 
Sbjct: 545  MGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYIGQGP 604

Query: 622  QRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFR-AHLDARYPQINYKLKQIELGPG 680
             RF L  +PE    ++ +I     +     AL  R R A  +   P    ++ Q+  GP 
Sbjct: 605  PRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGPY 664

Query: 681  GGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRY 740
                +  R++G D + LR IAA+V  V+ A P    +  DW      L    N+ + +  
Sbjct: 665  SPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQSV 724

Query: 741  GITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEY 800
            G+T A V + L    +G  I   R+    + +V R   + R+D   IE   +   +  + 
Sbjct: 725  GLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVG-SNGQR 783

Query: 801  IPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMAD--PDLLGEETAATLQQRLQPQIEAIPL 858
            +P+ Q+     +R EDP++ R++R   +TV  D    L   + +  + + LQP +    L
Sbjct: 784  VPVSQIG-DVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIV--TQL 840

Query: 859  PPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIG 918
            P GY +E  G  E S  A  ++   +P+      LI +    S+   ++V+LT PL +IG
Sbjct: 841  PAGYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIG 900

Query: 919  VTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRV 978
            V   LL    PFG  AL+G ++LSG+L++N ++L+ QI+     G  P+ AVV+A++ R 
Sbjct: 901  VVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRA 960

Query: 979  RPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVK 1034
            RPV + A+  IL  IPL   +F+  +A T++ G    T++TL+ +P +Y ++  ++
Sbjct: 961  RPVLLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIR 1016