Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1048 a.a., cation efflux system protein from Pseudomonas putida KT2440

 Score =  280 bits (715), Expect = 5e-79
 Identities = 264/1059 (24%), Positives = 471/1059 (44%), Gaps = 84/1059 (7%)

Query: 25   YFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTY 84
            + I  R++  +  ++    G  ++  L     P  T     + T+ PG +P + E+ +T+
Sbjct: 8    FAIEQRLVVMLAVVLMAAVGIHSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRITF 67

Query: 85   PLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPG 144
             +E A+  L  + +  S+S  GLSQ+TV   +        Q+ +E   ++   +  LP G
Sbjct: 68   AIETAMAGLPGLKQTRSLSRSGLSQVTVIFDDGTDIFFARQLVNE---RLQVAREQLPEG 124

Query: 145  VNPPL--VIDDFGDVY-------GILLAVTGEGYSYKELLDYVDYL-RRELELIDGVSKV 194
            +   +  +    G+++          L   G  Y+  +L    D++ + +L  + GV++V
Sbjct: 125  IEAGMGPISTGLGEIFLWTVEAQEGALKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAEV 184

Query: 195  SVSGQQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEF 254
            +  G   +Q  I    KR++   ++   +   L   N    AG I    E + I   G+ 
Sbjct: 185  NSIGGHAKQYLIAPEPKRLAAYKLTLNDLIAALERNNANIGAGYIERNGEQLLIRAPGQV 244

Query: 255  DDVEKLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNV 314
               E + ++++S       I +  VA+V  G  E+ S   T NG+  +   V    G N 
Sbjct: 245  ASAEDIANIVISSVDGTP-IRVSHVAQVGLGE-ELRSGAATENGREVVLGTVFMLIGENS 302

Query: 315  VEVGQRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFM 374
              V Q    +L E+    P G+    VY +   V+K+++    +L +   +VI VL  F+
Sbjct: 303  RTVSQAVAAKLVEINRNLPKGVVAVTVYDRTNLVEKAIATVKKNLIEGAILVIAVLFLFL 362

Query: 375  G-LRSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGIL-- 431
            G +R+ L+  +++ L++L TF  M   K+    +SLGAL    G++VD A+V+VE  +  
Sbjct: 363  GNIRAALITAMVIPLSMLFTFTGMFSNKVSANLMSLGAL--DFGIIVDGAVVIVENAIRR 420

Query: 432  ---IGTQKGRT-----RLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTL 483
                  + GR      R         + + PL+   +I +  + PI       G+    +
Sbjct: 421  LAHAQQRHGRMLTRGERFHEVFAAAREARRPLIYGQLIIMVVYLPIFALTGVEGKMFHPM 480

Query: 484  FTVLLISLMLSWFTAISLTPFFADLFFRGQKAPASG----EESDPYQGFIFVVYRRFLEF 539
               ++++L+ +   +++  P    LF  G+     G         Y   +  V  R    
Sbjct: 481  AFTVVMALLGAMILSVTFVPAAIALFVTGKVKEEEGLVMRTARQRYAPVLAWVLGRRKLA 540

Query: 540  CMRRAWLTMGVLVLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLE 599
            C   A L   VL+ G+ AS  G       F PS +   F +      GT +  +  +   
Sbjct: 541  CAAAAAL---VLLSGVMASRMG-----SEFIPSLSEGDFALQALRVPGTSLSQSVDMQQR 592

Query: 600  LEKWLSAQ----ESVDSVTTTAG-------KGLQRFMLTYSPEKSYAAYGEITTRVTDYQ 648
            LE+ + AQ    E V + T TA          +    +   P + +   G+    +    
Sbjct: 593  LEQAIIAQVPEVERVFARTGTAEIASDPMPPNISDAYVMLRPREQWVDPGKPRDELIAQV 652

Query: 649  QLAALMARFRAHLDARYPQINYKLKQI------ELGPGGGAKIEARIVGSDPTVLRSIAA 702
            Q AA          A  P  NY+L Q       EL  G  + +  ++ G D  VL   AA
Sbjct: 653  QRAA----------ASVPGSNYELSQPIQLRFNELISGVRSDVAVKLFGDDMEVLNRTAA 702

Query: 703  QVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYGITKADVDEFLAMSFSGKTIGV 762
            Q+   +   PGA  ++ +      VL    +  +A R+G+   DV + +A++  G+T G 
Sbjct: 703  QIAASLQGVPGASEVKVEQTTGLPVLTIDIDRDKAARHGLNVGDVQDAIAIAVGGRTAGT 762

Query: 763  YRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSE-------YIPLQQV-TLGYEMRW 814
              +G     +V RL E  R D+  +  + I  PA +        +IPL QV TL  ++  
Sbjct: 763  LYEGDRRFDMVVRLSETLRTDVDGLASLLIPVPASAAERAGQIGFIPLSQVATLNLQLGP 822

Query: 815  EDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAIPLPPGYFLEWGGEYESSG 874
                + R++ KR++ V A+  + G +  + +Q+  Q  I+ + +PPGY+  WGG++E   
Sbjct: 823  NQ--VSREDGKRVVVVSAN--VRGRDLGSFVQEAEQALIDQVQVPPGYWTRWGGQFEQLQ 878

Query: 875  DAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMA 934
             A   L   +P+  L +  + + +FN++++ L+V+  +P A+ G    L A + P    A
Sbjct: 879  SAAERLQVVVPVALLLVMALLLMMFNNLRDGLLVFTGIPFALTGGVLALWARDIPLSISA 938

Query: 935  LLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMIP 994
             +GF++LSG+ + NG+V++  I      G+    AV + +L+R+RPV M A+   LG IP
Sbjct: 939  GVGFIALSGVAVLNGLVMIAFIRGLREEGRTLRAAVEEGALTRLRPVLMTALVASLGFIP 998

Query: 995  LLPDI-----FFRPMAVTIMFGLGFATVLTLIVVPVLYR 1028
            +           RP+A  ++ G+  +T LTL+V+P LY+
Sbjct: 999  MALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYQ 1037



 Score = 39.7 bits (91), Expect = 1e-06
 Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 17/177 (9%)

Query: 876  AKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMAL 935
            A A++ K +  G + +  +      +++ +LI  + +PL+++   TG+ +       M+L
Sbjct: 339  AIATVKKNLIEGAILVIAVLFLFLGNIRAALITAMVIPLSMLFTFTGMFSNKVSANLMSL 398

Query: 936  LGFLSLSGMLLKNGIVLLD----------QIEIEMHSGKDPYLAVVDASLSRVRPVCMAA 985
             G L   G+++   +V+++          Q    M +  + +  V  A+    RP+    
Sbjct: 399  -GALDF-GIIVDGAVVIVENAIRRLAHAQQRHGRMLTRGERFHEVFAAAREARRPLIYGQ 456

Query: 986  VTTILGMIPL-----LPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVKVPQ 1037
            +  ++  +P+     +    F PMA T++  L  A +L++  VP    LF   KV +
Sbjct: 457  LIIMVVYLPIFALTGVEGKMFHPMAFTVVMALLGAMILSVTFVPAAIALFVTGKVKE 513